BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0197700 Os02g0197700|AK065498
         (240 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G11755.1  | chr1:3969987-3971488 REVERSE LENGTH=255            169   9e-43

>AT1G11755.1 | chr1:3969987-3971488 REVERSE LENGTH=255
          Length = 254

 Score =  169 bits (429), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 96/232 (41%), Positives = 143/232 (61%), Gaps = 13/232 (5%)

Query: 14  VHLVISFFGSLSHLKNDLECYLISFKLLPKYRNLHLERLAYLGVVVDSREAKNALKVKQL 73
           +H+V+S +  +S +   +E Y I+  L  KY ++ LE+L  L VVVD   A++   V +L
Sbjct: 29  IHIVVSLWYIVSGIFEAIESYAITLGLNKKYGSIDLEKLRCLAVVVDIEAAQDVANVVEL 88

Query: 74  LRWFSTIGINYLILYDIEGVLKELIQPGIETSTDGNPINSL--DVVADTKASCYRHGGMF 131
           L+W +TIG+  + L+D +G+LK+     +ET      +  +  DV  D K        + 
Sbjct: 89  LQWLTTIGVKQVGLFDSQGLLKKSKDLILETVPGSMLLEEIEKDVAPDGKR-------IA 141

Query: 132 MECLSSSDGKEAIAKVANLLYSTCCNS----DNKSEIAFTEADMTHALKAVGTGGPEPDL 187
           +E +SSSD KEA+ K AN+L      S    D+K E  FTE+ +  AL+ VG     PDL
Sbjct: 142 LEFISSSDNKEAVMKAANILLQRYLKSSHPEDDKGEDFFTESHLNDALRVVGENVHVPDL 201

Query: 188 LLVYGPGRFHLGFPAWRLRYTEIMYVGPLESMKYGTIVKALYRFSRKYQNYG 239
           LLVYGP R HLGFPAWRLRYTEI+++G L+ M+YG+++KA+++F+  +QNYG
Sbjct: 202 LLVYGPIRSHLGFPAWRLRYTEIVHMGTLKYMRYGSLLKAIHKFTGVHQNYG 253



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.139    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,049,213
Number of extensions: 208786
Number of successful extensions: 416
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 414
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 144
Effective length of database: 8,474,633
Effective search space: 1220347152
Effective search space used: 1220347152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)