BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0196800 Os02g0196800|AK070521
         (429 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G12050.1  | chr1:4072904-4075856 FORWARD LENGTH=422            631   0.0  

>AT1G12050.1 | chr1:4072904-4075856 FORWARD LENGTH=422
          Length = 421

 Score =  631 bits (1627), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 284/421 (67%), Positives = 350/421 (83%), Gaps = 3/421 (0%)

Query: 9   LRSFVEVAPGSHFPIQNLPFGVFXXXXXXXXXXXXXAVAIGDFALDLAAVSDAGLFHGPL 68
           L+SF++V   SHFPIQNLP+GVF             AVAIGD  LDL+A+S+AGLF G +
Sbjct: 4   LKSFIDVGSDSHFPIQNLPYGVFKPESNSTPRP---AVAIGDLVLDLSAISEAGLFDGLI 60

Query: 69  LSASPCFRQETLNMFLGMGRPAWKEARATLQKILSADEPVLRDNEALKKKCLVPMSDTEM 128
           L  + CF Q  LN FL MGRPAWKEAR+TLQ+ILS++EP+LRDN+ L++K    MS  EM
Sbjct: 61  LKDADCFLQPNLNKFLAMGRPAWKEARSTLQRILSSNEPILRDNDVLRRKSFHQMSKVEM 120

Query: 129 LLPITVGDYTDFFCSVHHARNCGFIFRGPQTPVNPNWFQLPVGYHGRASSVIVSGTDIIR 188
           ++P+ +GDYTDFF S+HHA+NCG +FRGP+  +NPNWF+LP+ YHGRASS+++SGTDIIR
Sbjct: 121 IVPMVIGDYTDFFASMHHAKNCGLMFRGPENAINPNWFRLPIAYHGRASSIVISGTDIIR 180

Query: 189 PKGQGHPTGDSRPYFGPSKKLDFELEMAAIVGPGNELGKPIDINDAEEHIFGLMIMNDWS 248
           P+GQGHP G+S PYFGPSKKLDFELEMAA+VGPGNELGKPID+N+A +HIFGL++MNDWS
Sbjct: 181 PRGQGHPQGNSEPYFGPSKKLDFELEMAAVVGPGNELGKPIDVNNAADHIFGLLLMNDWS 240

Query: 249 ARDIQAWETIPLGPFLGKSFSTTVSPWIVTMDALKPFTCEAPKQEPEPLPYLAEKNHVNY 308
           ARDIQAWE +PLGPFLGKSF TT+SPWIVT+DAL+PF C+APKQ+P PLPYLAEK  VNY
Sbjct: 241 ARDIQAWEYVPLGPFLGKSFGTTISPWIVTLDALEPFGCQAPKQDPPPLPYLAEKESVNY 300

Query: 309 DIPLEVWIKPKEQSEPSMVAKSNFKHLYWTLTQQLAHHTVNGCNLRPGDMFATGTLSGPE 368
           DI LEV +KP  + +  ++ KSNF++LYWT+TQQLAHHTVNGCNLRPGD+  TGT+SGPE
Sbjct: 301 DISLEVQLKPSGRDDSCVITKSNFQNLYWTITQQLAHHTVNGCNLRPGDLLGTGTISGPE 360

Query: 369 TESLGCLLELTWNGQKEISVGNSTRKFLEDGDEVILTACCKGEGYNVGFGTCTGKVLPAL 428
            +S GCLLELTWNGQK +S+  +T+ FLEDGD+V  +  CKG+GYNVGFGTCTGK++P+ 
Sbjct: 361 PDSYGCLLELTWNGQKPLSLNGTTQTFLEDGDQVTFSGVCKGDGYNVGFGTCTGKIVPSP 420

Query: 429 P 429
           P
Sbjct: 421 P 421



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.138    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,084,792
Number of extensions: 452950
Number of successful extensions: 901
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 900
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 328
Effective length of database: 8,337,553
Effective search space: 2734717384
Effective search space used: 2734717384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)