BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0195500 Os02g0195500|AK121049
(891 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G12960.1 | chr5:4097788-4101518 FORWARD LENGTH=866 955 0.0
AT5G12950.1 | chr5:4093117-4096806 FORWARD LENGTH=862 946 0.0
>AT5G12960.1 | chr5:4097788-4101518 FORWARD LENGTH=866
Length = 865
Score = 955 bits (2468), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/823 (56%), Positives = 596/823 (72%), Gaps = 36/823 (4%)
Query: 82 TPTDESTWMSLMPRRLLASPVSSPRRDAFDWLMLYRNXXXXXXXXXXXXXXXXXXXXXXX 141
TPTD+S W +L+PR++L D F W MLYR
Sbjct: 66 TPTDDSAWSTLLPRKMLKE-----ETDDFAWTMLYRKFKDSNSSGNFLKDVSL------- 113
Query: 142 XHDVRLQPGTVYWQAQQTNLEYXXXXXXXXXXWSFRTQAGLPASGAPYGGWEGPGVELRG 201
HDVRL P + +W+AQQTNLEY ++FR +AGL A G PYGGWE P ELRG
Sbjct: 114 -HDVRLDPSSFHWRAQQTNLEYLLMLDVDGLAYNFRKEAGLNAPGVPYGGWEKPDSELRG 172
Query: 202 HFVGHYLSATAKMWASTHNDTLLAKMSSVVDALHDCQKKMGSGYLSAFPSEFFDRVESIK 261
HFVGHYLSATA MWASTHN+TL AKM+++V AL +CQ+K G+GYLSAFPS FFDR E+I
Sbjct: 173 HFVGHYLSATAYMWASTHNETLKAKMTALVSALAECQQKYGTGYLSAFPSSFFDRFEAIT 232
Query: 262 AVWAPYYTIHKIMQGLLDQYTVAGNSKALDLVVGMANYFSDRVKNVIQKYSIERHWASLN 321
VWAPYYTIHKI+ GL+DQY +AGN++AL + GMA+YF RV+NVI+KYS+ERHW SLN
Sbjct: 233 HVWAPYYTIHKILAGLVDQYKLAGNTQALKMATGMADYFYGRVQNVIKKYSVERHWLSLN 292
Query: 322 EESGGMNDVLYQLYTITNDQKHLTLAHLFDKPCFLGLLAVQADSISGFHSNTHIPVVIGA 381
EE+GGMNDVLYQLY+IT D K+L LAHLFDKPCFLG+LA+QAD ISGFH+NTHIP+V+G+
Sbjct: 293 EETGGMNDVLYQLYSITRDSKYLFLAHLFDKPCFLGVLAIQADDISGFHANTHIPIVVGS 352
Query: 382 QMRYEVTGDLLYKQIATFFMDTINSSHSYATGGTSAGEFWTNPKRLADTLSTENEESCTT 441
Q RYE+TGDLL+K+I FFMD +N+SHSYATGGTS EFW +PKR+A TL TENEESCTT
Sbjct: 353 QQRYEITGDLLHKEIPMFFMDIVNASHSYATGGTSVKEFWQDPKRMATTLQTENEESCTT 412
Query: 442 YNMLKVSRNLFRWTKELSYADYYERALINGVLSIQRGTDPGVMIYMLPQAPGRSKAVSYH 501
YNMLKVSRNLFRWTKE+SYADYYERAL NGVL IQRGTDPG MIYMLP G SKAV+YH
Sbjct: 413 YNMLKVSRNLFRWTKEVSYADYYERALTNGVLGIQRGTDPGRMIYMLPLGKGVSKAVTYH 472
Query: 502 GWGTKYDSFWCCYGTGIESFSKLGDSIYFEEKGDRPVLNIIQYIPSAYNWKAAGLTVNQQ 561
GWGT YDSFWCCYGTGIESFSKLGDSIYF+E G P L + QYI S+ +WK+AGL+++Q+
Sbjct: 473 GWGTPYDSFWCCYGTGIESFSKLGDSIYFQEDGATPALYVTQYISSSLDWKSAGLSISQK 532
Query: 562 LKPISSLDMFLQVSLSTSAKTNG--QSATLNVRIPSWTSANGAKATLNDNDLGLMSPGSF 619
+ P+ S D +++V+ + S+ G + +TLN+RIP WT++ GAK +LN L + + G+F
Sbjct: 533 VNPVVSWDPYMRVTFTLSSSKVGVAKESTLNLRIPVWTNSIGAKVSLNGRPLNVPTSGNF 592
Query: 620 LSISKQWNSDDHLSLQFPITLRTEAIKDDRPEYASLQAILFGPFVLAGLSTGDWN----A 675
LSI ++W S D ++++ P+++RTEAIKDDRPEYASLQAIL+GP++LAG ++ DW+ A
Sbjct: 593 LSIKQKWKSGDQVTMELPMSIRTEAIKDDRPEYASLQAILYGPYLLAGHTSMDWSITTQA 652
Query: 676 EAGNTSAISDWISPVPSSYNSQLVTFTQESSGKTFVLSSANGSLTMQERPTVDGTDTAIH 735
+AGN WI+P+P + NS LVT +Q+S ++VLS++N ++ M+ P GT A+
Sbjct: 653 KAGN------WITPIPETLNSHLVTLSQQSGNISYVLSNSNQTIIMKVSPE-PGTQDAVS 705
Query: 736 ATFRVHPQDSAGQLDTQGATLKGTSVQIEPFDLPGTVIT----NNLTQSA---QKSSDSL 788
ATFR+ DS + + L G+ V +EPFD PG ++ ++LT A S
Sbjct: 706 ATFRLVTDDSKHPISSPEG-LIGSLVMLEPFDFPGMIVKQATDSSLTVQASSPSDKGSSS 764
Query: 789 FNIVPGLDGNPNSVSLELGTKPGCFLVIGVDYSVGTKIQVSCKSSLPSINGIFEQAASFV 848
F +V GLDG P SVSL L +K GCF+ GTK+++ C S+ + + F+QAASF
Sbjct: 765 FRLVSGLDGKPGSVSLSLESKKGCFVYSDQTLKQGTKLRLECGSA--ATDEKFKQAASFS 822
Query: 849 QAAPLRQYHPISFIAKGVKRNFLLEPLYSLRDEFYTVYFNLGA 891
+ QY+P+SF+ G +RNF+L PL+SLRDE Y VYF++ A
Sbjct: 823 LKTGMNQYNPMSFVMSGTQRNFVLSPLFSLRDETYNVYFSVQA 865
>AT5G12950.1 | chr5:4093117-4096806 FORWARD LENGTH=862
Length = 861
Score = 946 bits (2444), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/817 (56%), Positives = 586/817 (71%), Gaps = 28/817 (3%)
Query: 82 TPTDESTWMSLMPRRLLASPVSSPRRDAFDWLMLYRNXXXXXXXXXXXXXXXXXXXXXXX 141
TP D+S W SL+PR++L D F W MLYR
Sbjct: 62 TPADDSAWSSLLPRKMLKEEA-----DEFAWTMLYRKFKDSNSSGNFLKDVSL------- 109
Query: 142 XHDVRLQPGTVYWQAQQTNLEYXXXXXXXXXXWSFRTQAGLPASGAPYGGWEGPGVELRG 201
HDVRL P + +W+AQQTNLEY WSFR +AGL A G YGGWE P ELRG
Sbjct: 110 -HDVRLDPDSFHWRAQQTNLEYLLMLDVDGLAWSFRKEAGLDAPGDYYGGWERPDSELRG 168
Query: 202 HFVGHYLSATAKMWASTHNDTLLAKMSSVVDALHDCQKKMGSGYLSAFPSEFFDRVESIK 261
HFVGHYLSATA MWASTHNDTL KMS++V AL +CQ+K G+GYLSAFPS FFDR E+I
Sbjct: 169 HFVGHYLSATAYMWASTHNDTLKEKMSALVSALSECQQKSGTGYLSAFPSSFFDRFEAIT 228
Query: 262 AVWAPYYTIHKIMQGLLDQYTVAGNSKALDLVVGMANYFSDRVKNVIQKYSIERHWASLN 321
VWAPYYTIHKI+ GL+DQY +AGNS+AL + GMA+YF RV+NVI+KYS+ERHW SLN
Sbjct: 229 PVWAPYYTIHKILAGLVDQYKLAGNSQALKMATGMADYFYGRVRNVIRKYSVERHWQSLN 288
Query: 322 EESGGMNDVLYQLYTITNDQKHLTLAHLFDKPCFLGLLAVQADSISGFHSNTHIPVVIGA 381
EE+GGMNDVLYQLY+IT D K+L LAHLFDKPCFLG+LA+QAD ISGFH+NTHIP+V+G+
Sbjct: 289 EETGGMNDVLYQLYSITGDSKYLLLAHLFDKPCFLGVLAIQADDISGFHANTHIPIVVGS 348
Query: 382 QMRYEVTGDLLYKQIATFFMDTINSSHSYATGGTSAGEFWTNPKRLADTLSTENEESCTT 441
Q RYE+TGDLL+K+I+ FFMD N+SHSYATGGTS EFW +PKR+A L TENEESCTT
Sbjct: 349 QQRYEITGDLLHKEISMFFMDIFNASHSYATGGTSVSEFWQDPKRMATALQTENEESCTT 408
Query: 442 YNMLKVSRNLFRWTKELSYADYYERALINGVLSIQRGTDPGVMIYMLPQAPGRSKAVSYH 501
YNMLKVSRNLFRWTKE+SYADYYERAL NGVL IQRGT PG+MIYMLP G SKAV+YH
Sbjct: 409 YNMLKVSRNLFRWTKEVSYADYYERALTNGVLGIQRGTQPGLMIYMLPLGKGVSKAVTYH 468
Query: 502 GWGTKYDSFWCCYGTGIESFSKLGDSIYFEEKGDRPVLNIIQYIPSAYNWKAAGLTVNQQ 561
GWGT YDSFWCCYGTGIESFSKLGDSIYF+E G P L + QYI S+ +WK+AGL+++Q+
Sbjct: 469 GWGTPYDSFWCCYGTGIESFSKLGDSIYFQEDGATPALYVTQYISSSLDWKSAGLSISQK 528
Query: 562 LKPISSLDMFLQVSLSTSAKTNG--QSATLNVRIPSWTSANGAKATLNDNDLGLMSPGSF 619
+ P+ S D +++V+ + S+ G + +TLN+RIP WT++ GAK +LN L + + G+F
Sbjct: 529 VNPVVSWDPYMRVTFTLSSSKVGVAKESTLNLRIPVWTNSIGAKVSLNGRPLNVPTSGNF 588
Query: 620 LSISKQWNSDDHLSLQFPITLRTEAIKDDRPEYASLQAILFGPFVLAGLSTGDWNAEAGN 679
LSI ++W S D ++++ P+++RTEAIKDDRPEYASLQAIL+GP++LAG ++ DW+
Sbjct: 589 LSIKQKWKSGDQVTMELPMSIRTEAIKDDRPEYASLQAILYGPYLLAGHTSRDWSIT--T 646
Query: 680 TSAISDWISPVPSSYNSQLVTFTQESSGKTFVLSSANGSLTMQERPTVDGTDTAIHATFR 739
+ WI+P+P + NS LVT +Q+S ++V S++N ++TM+ P GT A+ ATFR
Sbjct: 647 QAKPGKWITPIPETQNSYLVTLSQQSGNVSYVFSNSNQTITMRVSPE-PGTQDAVAATFR 705
Query: 740 VHPQDSAGQLDTQGATLKGTSVQIEPFDLPGTVIT----NNLTQSAQKSSD---SLFNIV 792
+ +S ++ L G V +EPFD PG ++ ++LT A SD S F +V
Sbjct: 706 LVTDNSKPRISGPEG-LIGRLVMLEPFDFPGMIVKQATDSSLTVQASSPSDKGASSFRLV 764
Query: 793 PGLDGNPNSVSLELGTKPGCFLVIGVDYSVGTKIQVSCKSSLPSINGIFEQAASFVQAAP 852
GLDG SVSL L +K GCF+ GTK+++ C S + + F++AASF
Sbjct: 765 SGLDGKLGSVSLRLESKKGCFVYSDQTLKQGTKLRLECGSD--ATDEKFKEAASFSLKTG 822
Query: 853 LRQYHPISFIAKGVKRNFLLEPLYSLRDEFYTVYFNL 889
+ QY+P+SF+ G +RNF+L PL+SLRDE Y VYF++
Sbjct: 823 MHQYNPMSFVMSGTQRNFVLSPLFSLRDETYNVYFSV 859
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.132 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 17,698,205
Number of extensions: 707226
Number of successful extensions: 1576
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1560
Number of HSP's successfully gapped: 2
Length of query: 891
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 784
Effective length of database: 8,173,057
Effective search space: 6407676688
Effective search space used: 6407676688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 116 (49.3 bits)