BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0194000 Os02g0194000|AK064096
(302 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G33610.1 | chr2:14229023-14231149 FORWARD LENGTH=470 248 4e-66
AT1G21700.1 | chr1:7620156-7623978 REVERSE LENGTH=808 94 1e-19
AT2G47620.1 | chr2:19532034-19534251 FORWARD LENGTH=513 75 3e-14
AT3G07740.4 | chr3:2470014-2473062 REVERSE LENGTH=556 51 7e-07
>AT2G33610.1 | chr2:14229023-14231149 FORWARD LENGTH=470
Length = 469
Score = 248 bits (632), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 125/286 (43%), Positives = 185/286 (64%), Gaps = 11/286 (3%)
Query: 6 CTGCRTVCGLAYFSCEKADISLCARCYVRANYRPGLTSADFKRIEITEDAKSDWTDKETL 65
C GC+ +C +A F+C+K D++LCARCYVR+NYR G+ S++FKR+EI+E++K +W+DKE L
Sbjct: 175 CNGCKAICSIACFACDKYDLTLCARCYVRSNYRVGINSSEFKRVEISEESKPEWSDKEIL 234
Query: 66 HLLEAVLHYGEDWKKVSHHVGSRSEKDCIARFTRLPFGEQFM--GPKEDKIQFGN---DC 120
LLEAV+HYG+DWKKV+ HV R+EKDC+++F +LPFGEQF+ ED ++ + D
Sbjct: 235 LLLEAVMHYGDDWKKVASHVIGRTEKDCVSQFVKLPFGEQFVKESDSEDGLEMFDQIKDS 294
Query: 121 DLNE-----ESGSHISKRLRLTPLADASNPIMAQVAFLSAIVGXXXXXXXXXXXXXXXXX 175
D+ E + GS +KR++LTPLADASNPIMAQ AFLSA+ G
Sbjct: 295 DIPESEGIDKDGSSPNKRIKLTPLADASNPIMAQAAFLSALAGTNVAEAAARAAVRALSD 354
Query: 176 XDISASETDXXXXXXXXXXXXCTNGLSANDLLKEASANAQVQLEKERKAIEQSLSDIVGV 235
D A + + ++G + + + A A+A+ +EKE +E ++ + V V
Sbjct: 355 VDYEA-DKNASRDPNRQDANAASSGETTRNESERAWADAKSLIEKEEHEVEGAIKETVEV 413
Query: 236 QMKEIQDKIRRFEQKELLMEKERKQLHCLKELLFSDQLAVVQHQRR 281
+MK+I+D+I FE+ +L ME+ RKQL ++ LLF DQL + H R+
Sbjct: 414 EMKKIRDRIVHFEKLDLEMERSRKQLEEVRNLLFVDQLNIFFHTRK 459
>AT1G21700.1 | chr1:7620156-7623978 REVERSE LENGTH=808
Length = 807
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 124/300 (41%), Gaps = 47/300 (15%)
Query: 6 CTGCRTVCGLAYF-SCEKADISLCARCYVRANYRPGLTSADFKRIE----ITEDAKSDWT 60
C C YF S +K DI LC C+ + G + DF R++ + +WT
Sbjct: 345 CNHCSRPLPTVYFQSQKKGDILLCCDCFHHGRFVVGHSCLDFVRVDPMKFYGDQDGDNWT 404
Query: 61 DKETLHLLEAVLHYGEDWKKVSHHVGSRSEKDCIARFTRLPFGEQFM------------G 108
D+ETL LLEAV Y E+W +++ HVGS+S+ CI F RLP + +
Sbjct: 405 DQETLLLLEAVELYNENWVQIADHVGSKSKAQCILHFLRLPVEDGLLDNVEVSGVTNTEN 464
Query: 109 PKEDKIQFGNDCDLN----EESGSHISKRLRLTPLADASNPIMAQVAFLSAIVGXXXXXX 164
P G D + + E GS +L P + NP+MA VAFL++ VG
Sbjct: 465 PTNGYDHKGTDSNGDLPGYSEQGSDTEIKL---PFVKSPNPVMALVAFLASAVGPRVAAS 521
Query: 165 XXXXXXXXXXXXDISASET----------DXXXXXXXXXXXXCTNGLSANDLLKE----- 209
D SE NG A L +
Sbjct: 522 CAHESLSVLSEDDRMKSEGMQGKEASLLDGENQQQDGAHKTSSQNGAEAQTPLPQDKVMA 581
Query: 210 --------ASANAQVQLEKERKAIEQSLSDIVGVQMKEIQDKIRRFEQKELLMEKERKQL 261
A+ A++ + E + I++ ++IV Q+K ++ K+++F + E L+ KE +Q+
Sbjct: 582 AFRAGLSAAATKAKLFADHEEREIQRLSANIVNHQLKRMELKLKQFAEIETLLMKECEQV 641
>AT2G47620.1 | chr2:19532034-19534251 FORWARD LENGTH=513
Length = 512
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 86/181 (47%), Gaps = 32/181 (17%)
Query: 5 LCTGCRTVCGLAYFSCEKADISLCARCYVRANYRPGLTSADFKRIEITEDAKSDWTDKET 64
+C C C ++ K +++C +C+ NY T+ DFK I A + WT++E
Sbjct: 176 VCAHCGERCDSPFYQHNKGIVNICEKCFKNGNYGENNTADDFKLI--GNSAAAVWTEEEI 233
Query: 65 LHLLEAVLHYGEDWKKVSHHVGSRSEKDCIARFTRLPFGEQFMGPKEDKIQFGNDCDLNE 124
L LLE+VL +G+DW+ +S V ++S DCI++ LPFGE MG ++ N L E
Sbjct: 234 LLLLESVLKHGDDWELISQSVSTKSRLDCISKLIELPFGEFLMGSASGRL---NPSILTE 290
Query: 125 ESGSH---------------------------ISKRLRLTPLADASNPIMAQVAFLSAIV 157
+ + +KR R+ +++ + +M QVA +++ V
Sbjct: 291 DENTEQVQTDGQEHEETETREEKEDRVNEDEPPAKRKRVALISEGDSSLMKQVAAMASKV 350
Query: 158 G 158
G
Sbjct: 351 G 351
>AT3G07740.4 | chr3:2470014-2473062 REVERSE LENGTH=556
Length = 555
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 46/106 (43%), Gaps = 13/106 (12%)
Query: 6 CTGC-RTVCGLAYFSCEK-ADISLCARCYV-------RANYRPGLTSADFKRIEITED-- 54
C C + + GL F C D LC C+ N P F+R
Sbjct: 53 CNYCDKDLSGLVRFKCAVCMDFDLCVECFSVGVELNRHKNSHPYRVMVSFQRRADNLSFS 112
Query: 55 -AKSDWTDKETLHLLEAVLHYG-EDWKKVSHHVGSRSEKDCIARFT 98
SDW E + LLEA+ YG +WK+V+ HVGS++ +CI F
Sbjct: 113 LVTSDWNADEEILLLEAIATYGFGNWKEVADHVGSKTTTECIKHFN 158
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.132 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,831,812
Number of extensions: 228222
Number of successful extensions: 1009
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1002
Number of HSP's successfully gapped: 5
Length of query: 302
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 204
Effective length of database: 8,419,801
Effective search space: 1717639404
Effective search space used: 1717639404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)