BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0193900 Os02g0193900|AK069578
         (220 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G22370.1  | chr2:9501019-9502078 REVERSE LENGTH=220            304   2e-83

>AT2G22370.1 | chr2:9501019-9502078 REVERSE LENGTH=220
          Length = 219

 Score =  304 bits (779), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 139/200 (69%), Positives = 169/200 (84%)

Query: 1   MECVVQGIIETQHVDALEVLLQGLSGVPKERVRVHELCLKSGPNLGVVPSEVRLLCDLAQ 60
           MECVVQGIIETQHV+ALE+LLQGL GV +ER+RVHELCL+SGPNLGVV SEVRLLCDL Q
Sbjct: 3   MECVVQGIIETQHVEALEILLQGLCGVQRERLRVHELCLRSGPNLGVVSSEVRLLCDLDQ 62

Query: 61  STPSWTIRHVGGAMRGAGAEQISVLVRSIVESKASNNVLRYFYGIGYKLDHEVLKGGFAF 120
             P+WT++HVGGAMRGAGA+QISVLVR+++ESK S N LR FY +GYKLDHE+LK GFAF
Sbjct: 63  PEPTWTVKHVGGAMRGAGADQISVLVRNMIESKVSKNALRMFYALGYKLDHELLKVGFAF 122

Query: 121 RFHRGAQIXXXXXXXXKMTKLHATNEAVPITPAIQLVEITAPAAADNYNDVVSAVTSFCE 180
            F R A I        KM K+HA +EAVP+TP +Q+V++TAPA ++NY++V +AV+SFCE
Sbjct: 123 HFQRTAHISVSVSSVNKMPKVHAIDEAVPVTPGMQIVDVTAPATSENYSEVAAAVSSFCE 182

Query: 181 YLAPLLHLSKPGNSTGIVPT 200
           +LAPL+HLSKP  STG+VPT
Sbjct: 183 FLAPLVHLSKPSISTGVVPT 202



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,023,492
Number of extensions: 148339
Number of successful extensions: 326
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 125
Effective length of database: 8,502,049
Effective search space: 1062756125
Effective search space used: 1062756125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)