BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0181800 Os02g0181800|AK121784
(324 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G21270.3 | chr2:9107841-9110012 FORWARD LENGTH=341 392 e-109
AT4G38930.2 | chr4:18149907-18151616 FORWARD LENGTH=316 371 e-103
AT2G29070.2 | chr2:12487797-12489335 FORWARD LENGTH=313 339 1e-93
AT4G15420.1 | chr4:8823822-8825949 FORWARD LENGTH=562 115 2e-26
>AT2G21270.3 | chr2:9107841-9110012 FORWARD LENGTH=341
Length = 340
Score = 392 bits (1007), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/321 (61%), Positives = 221/321 (68%), Gaps = 6/321 (1%)
Query: 9 SMYFEGYGYRGSTFEQTYRCYPASFIDKPQLETGDKIIMPPSALDRLASLHIEYPMLFEV 68
+M+F+GY Y G+TFEQ+YRCYPASFIDKPQLE+GDKIIMPPSALDRLASLHI+YPMLFE+
Sbjct: 21 TMFFDGYHYHGTTFEQSYRCYPASFIDKPQLESGDKIIMPPSALDRLASLHIDYPMLFEL 80
Query: 69 HNAAAERTSHCGVLEFIAEEGMIYMPYWMMQNLLLTEGDMVFIKNANLPKGTYVKLQPHT 128
NA ER +HCGVLEFIAEEGMIYMPYWMMQNLLL EGD+V ++N LPKGTYVKLQPHT
Sbjct: 81 RNAGIERVTHCGVLEFIAEEGMIYMPYWMMQNLLLQEGDIVRVRNVTLPKGTYVKLQPHT 140
Query: 129 TDFLDISNPKAILEKTLRNYSCLTTGDSIMVAYNNKKYYIDIVETKPSNAISIIETDCEV 188
TDFLDISNPKAILE LRNYSCLT+GDSIMV YNNKKY+IDIVETKP+NAISIIETDCEV
Sbjct: 141 TDFLDISNPKAILETALRNYSCLTSGDSIMVPYNNKKYFIDIVETKPANAISIIETDCEV 200
Query: 189 DFAPPLDYKEPERQKX-XXXXXXXXXXXXXXXXXXKFIPFTGPGRRLDGKAPKDKDVSAS 247
DFAPPLDYKEPER KF PFTG GRRLDG+ + AS
Sbjct: 201 DFAPPLDYKEPERPTAPSAAKGPAKAEEVVDEPEPKFNPFTGSGRRLDGRPLAYEPAPAS 260
Query: 248 SPAKRQANATNSVQPXXXXXXXXXXXXXXXEKLVFGPGGNR----TSXXXXXXXXXXXXX 303
S +Q N KLVFG GNR +
Sbjct: 261 SSKGKQPVVANG-NGQSSVASSSEKATRAQGKLVFGANGNRAPKEAAPKVGAAKETKKEE 319
Query: 304 XXXXXXXXFSAFTGRKYSLKG 324
F AF+G+KYSL+G
Sbjct: 320 QEKKDEPKFQAFSGKKYSLRG 340
>AT4G38930.2 | chr4:18149907-18151616 FORWARD LENGTH=316
Length = 315
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/321 (58%), Positives = 214/321 (66%), Gaps = 12/321 (3%)
Query: 10 MYFEGYGYRGSTFEQTYRCYPASFIDKPQLETGDKIIMPPSALDRLASLHIEYPMLFEVH 69
M+++GY Y G+TFEQTYRCYP+SFIDKPQ+E+GDKIIMPPSALDRLASL I+YPMLFE+
Sbjct: 1 MFYDGYAYHGTTFEQTYRCYPSSFIDKPQIESGDKIIMPPSALDRLASLQIDYPMLFELR 60
Query: 70 NAAAERTSHCGVLEFIAEEGMIYMPYWMMQNLLLTEGDMVFIKNANLPKGTYVKLQPHTT 129
NA+ + SHCGVLEFIAEEG+IY+PYWMMQNLLL EGDMV ++N LPKGTYVKLQPHTT
Sbjct: 61 NASTDSFSHCGVLEFIAEEGVIYIPYWMMQNLLLQEGDMVRVRNVTLPKGTYVKLQPHTT 120
Query: 130 DFLDISNPKAILEKTLRNYSCLTTGDSIMVAYNNKKYYIDIVETKPSNAISIIETDCEVD 189
DFLDI+NPKAILE LRNYSCLT GDSIMV YNNKKY+IDIVE KPSN ISIIETDCEVD
Sbjct: 121 DFLDIANPKAILETALRNYSCLTVGDSIMVPYNNKKYFIDIVEAKPSNGISIIETDCEVD 180
Query: 190 FAPPLDYKEPER--QKXXXXXXXXXXXXXXXXXXXKFIPFTGPGRRLDGKAPKDKDVSAS 247
FAPPLDYKEPER KF PFTG GRRLDG+ +
Sbjct: 181 FAPPLDYKEPERPVAPAPAKGEAKAKEVDVAEAEPKFNPFTGSGRRLDGRP------LSY 234
Query: 248 SPAKRQANATNSVQPXXXXXXXXXXXXXXXE--KLVFGPGGNRTSXXXXX--XXXXXXXX 303
P AN+ P KLVFG R++
Sbjct: 235 EPQPGAANSNGQSHPVASSSSSGSEKATQQNRGKLVFGSNVERSTKETTKVGAGKDRKQE 294
Query: 304 XXXXXXXXFSAFTGRKYSLKG 324
F AF+G+KYSL+G
Sbjct: 295 EEAEKEAKFQAFSGKKYSLRG 315
>AT2G29070.2 | chr2:12487797-12489335 FORWARD LENGTH=313
Length = 312
Score = 339 bits (869), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 171/313 (54%), Positives = 205/313 (65%), Gaps = 12/313 (3%)
Query: 19 GSTFEQTYRCYPASFIDKPQLETGDKIIMPPSALDRLASLHIEYPMLFEVHNAAAERTSH 78
GS+FEQ YRCYP +FIDK LE GDKIIMPPSALDRLASLHIEYPMLF++ N + E+TSH
Sbjct: 5 GSSFEQCYRCYPVTFIDKAHLEKGDKIIMPPSALDRLASLHIEYPMLFQLSNVSVEKTSH 64
Query: 79 CGVLEFIAEEGMIYMPYWMMQNLLLTEGDMVFIKNANLPKGTYVKLQPHTTDFLDISNPK 138
CGVLEF A+EG++Y+PYWMMQN+ L EGD++ +KN +L KGTY+KLQPHT DFLDISNPK
Sbjct: 65 CGVLEFTADEGLVYLPYWMMQNMSLEEGDVMQVKNISLVKGTYIKLQPHTQDFLDISNPK 124
Query: 139 AILEKTLRNYSCLTTGDSIMVAYNNKKYYIDIVETKPSNAISIIETDCEVDFAPPLDYKE 198
AILE TLR+YSCLTTGD+IMV YNNK+YYI++VE KPS+A+SIIETDCEVDFAPPLDYKE
Sbjct: 125 AILETTLRSYSCLTTGDTIMVPYNNKQYYINVVEAKPSSAVSIIETDCEVDFAPPLDYKE 184
Query: 199 PERQKXXXXXX----XXXXXXXXXXXXXKFIPFTGPGRRLDGKAPKDKDVSASSPAKRQA 254
PE+ + KF PFTG G+RLDGKA + + K+Q
Sbjct: 185 PEKPQKLTPSNKRPLQVKEEEEPASKVPKFTPFTGSGKRLDGKA---QTQTEPEDTKQQE 241
Query: 255 NATNSVQPXXXXXXXXXXXXXXXEKLVFGPGGN---RTSXXXXXXXXXXXXXXXXXXXXX 311
T + + KLVFG + +
Sbjct: 242 KPTENGKDDEKLSVTTPRQISG--KLVFGSNSKSAAKETAKVDDPKNIVQESSTKSDEAK 299
Query: 312 FSAFTGRKYSLKG 324
F FTG+KYSL G
Sbjct: 300 FKVFTGKKYSLNG 312
>AT4G15420.1 | chr4:8823822-8825949 FORWARD LENGTH=562
Length = 561
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 93/161 (57%), Gaps = 9/161 (5%)
Query: 42 GDKIIMPPSALDRLASLHI--EYPMLFE---VHNAAAERTSHCGVLEFIAEEGMIYMPYW 96
GDKI +PPS L+ + P+ FE V +A ++T+H GVLEF AE+G I +P
Sbjct: 91 GDKIKLPPSCFTELSDQGAFDKGPLYFELSVVDHADNKKTTHSGVLEFTAEDGTIGLPPH 150
Query: 97 MMQNLLLTEGDM----VFIKNANLPKGTYVKLQPHTTDFLDISNPKAILEKTLRNYSCLT 152
+ NL T M V I+ LPKG+Y KLQP F D+ N KAILE LR ++ L+
Sbjct: 151 VWSNLFSTHDPMDVPLVEIRYIRLPKGSYAKLQPDNLGFSDLPNHKAILETILRQHATLS 210
Query: 153 TGDSIMVAYNNKKYYIDIVETKPSNAISIIETDCEVDFAPP 193
D ++V Y Y + ++E +P+ +IS++ETD EVD P
Sbjct: 211 LDDVLLVNYGQVSYKLQVLELRPATSISVLETDIEVDIVSP 251
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.135 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,066,414
Number of extensions: 221807
Number of successful extensions: 412
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 404
Number of HSP's successfully gapped: 4
Length of query: 324
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 225
Effective length of database: 8,392,385
Effective search space: 1888286625
Effective search space used: 1888286625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)