BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0179800 Os02g0179800|J013132L12
         (762 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G30790.1  | chr4:14993383-14997785 REVERSE LENGTH=1149         582   e-166

>AT4G30790.1 | chr4:14993383-14997785 REVERSE LENGTH=1149
          Length = 1148

 Score =  582 bits (1501), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 353/798 (44%), Positives = 472/798 (59%), Gaps = 78/798 (9%)

Query: 1    MNTLVHVSMQRVKSAQIVIKEMMNELHAFQEVMGHQDKIFDSLKLASGMGHAYRACLAEV 60
            MN  VH  MQ++     +IK+   +   F+E M  QD +F  LKL  G+G AYRACLAEV
Sbjct: 382  MNNFVHGYMQKITYVTYIIKDAKLQFPVFREAMVRQDDLFADLKLVRGVGPAYRACLAEV 441

Query: 61   VRRKSSFKLYTGLAGQLAEKLATXXXXXXXXXXXXXXTWSKYIPEDIMGSMGLFDSPSQC 120
            VRRK+S KLY G+AGQLAEKLA               T   ++P D++ SMGL+D+P+QC
Sbjct: 442  VRRKASMKLYMGMAGQLAEKLAMKRETEVRKREEFLKTHGPFVPRDVLASMGLYDTPTQC 501

Query: 121  DVTVAPFDCNLLSIDVDDVEKLAPQSLVG--SFLKSERSQLPXXXXXXXXXXXXXXXXEQ 178
            DV VAP+D +LL+I++ DV++ AP+ LVG  S + S +S L                 E+
Sbjct: 502  DVNVAPYDTSLLNIEISDVDRYAPEFLVGLHSKIASLKSSL-----TMSGDSSLSAEPEE 556

Query: 179  YPPNADDKMDFQDFLGGFDSVDIAGTSKLEVENARLKAELASAIAVLCSFGAEYGYESID 238
               +  DK +F D L   + ++IAGTSK+EVENA+LKA+LASAI+ +CS G ++ YE +D
Sbjct: 557  IGIDTFDKDNFDDILAASELIEIAGTSKMEVENAKLKADLASAISRICSLGPQFEYEVLD 616

Query: 239  EGQIDNVLKDAREKTAAALSAKDEYANHLQAMLTAKQNQNLSYEKRIQELEEQLANQYIQ 298
            E +++NVLK+A +KTA AL AKDEY  HL  ML  KQ    SYEKRI+ELE++L+++Y+Q
Sbjct: 617  ESEVENVLKNAADKTAEALQAKDEYEKHLLLMLKEKQMHCDSYEKRIRELEQRLSDEYLQ 676

Query: 299  GHVISGSKDASDSLLSAFKANDCNLHISG---GRQTQVRDESSVAMDEASS----TSEQP 351
            G     +KD S   L   K ++     S    G +T V    S  MDE S     TS+QP
Sbjct: 677  GQR-HNNKDVSGLNLMHEKVSEYKAEASSDVEGNKTHV--SGSEPMDEVSCVSNLTSKQP 733

Query: 352  SKQTEGGDENMTDISGALNLQLLDPIARTNLDAFMAELPPDSEHKIVDSDKEGQVLTQFT 411
             K  EG DENM D S  L+           LD+ M E   ++E    DS+  G++    +
Sbjct: 734  CKAREGMDENMVDSSQVLS---------QPLDSSMLESQQNNEKGGKDSEA-GEMGVFLS 783

Query: 412  TTDTSGVPIEDPLGILNSRTNEHHTSELRNKELLVSELQSTLEDKSKRLDETESKLNALV 471
             + T+    E P   L+         + ++   ++ EL++ L +KS +L E ESKLN  +
Sbjct: 784  NSSTA----ESPQKSLDDNVATGRGLDAKDSGDIILELRNELMEKSNKLSEMESKLNGAM 839

Query: 472  DEVNSLKKELEHTQGLLDESQVSQMNCVQLENCLHEAREEARTNKCSADRRAVEYDALRS 531
            +EV++L +ELE  Q LL+E   SQMNC  LENCLHEAREEA+T+ C+ADRRA +Y ALR+
Sbjct: 840  EEVSNLSRELETNQKLLEE---SQMNCAHLENCLHEAREEAQTHLCAADRRASQYTALRA 896

Query: 532  SALRIHGLFERLNNCVTA-PGMSGFADX-XXXXXXXXXXXKKDEGDTTIQFQQCIKILAD 589
            SA+++ GLFER  + V A  G++ FAD              ++E D T +F++CI++LAD
Sbjct: 897  SAVKMRGLFERFRSSVCAGSGIADFADSLRTLAQALANSVNENEDDGTTEFRKCIRVLAD 956

Query: 590  KVGFLSRQSAELLERYSRI-------VRVLEEKKESIKNLYSKLQLEKXXXXXXXXXXXX 642
            KV FLS+   ELLE+   +        + LEEKKE +K LY+K QL K            
Sbjct: 957  KVSFLSKHREELLEKCQNLEATSEQTRKDLEEKKELVKTLYTKHQLGK-----------Q 1005

Query: 643  ASKEKISFGRFEVHELAVFVRNPAGHYEAINRNCSNYYLSEESVALFTEQHPRHPAYIIG 702
            A+KEKISFGR EVHE+A FV N AGHYEAINRNC NYYLS ES ALFT+  P  P YI+G
Sbjct: 1006 ANKEKISFGRLEVHEIAAFVLNQAGHYEAINRNCPNYYLSSESEALFTDHLPSRPTYIVG 1065

Query: 703  QIVHIERRIAKLPSHGDQMEASRLDSGGR---------------------RSPASMLNPY 741
            QIVHIER+I KLPS   Q+ AS     G+                      S  +  NPY
Sbjct: 1066 QIVHIERQIVKLPS---QLSASASPEAGKTHHLCSDQGSRTLASSSISTSTSATTTSNPY 1122

Query: 742  NLPVGCEYFLVTVAMIPD 759
             L  GCEYF+VT+AM+PD
Sbjct: 1123 GLSSGCEYFIVTIAMLPD 1140



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.130    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,410,828
Number of extensions: 556606
Number of successful extensions: 2133
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2138
Number of HSP's successfully gapped: 1
Length of query: 762
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 656
Effective length of database: 8,200,473
Effective search space: 5379510288
Effective search space used: 5379510288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 116 (49.3 bits)