BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0177700 Os02g0177700|AK119941
(195 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G25830.1 | chr4:13133727-13134790 FORWARD LENGTH=176 84 4e-17
AT4G16442.1 | chr4:9272042-9272970 REVERSE LENGTH=183 79 1e-15
AT2G35760.1 | chr2:15032059-15033094 FORWARD LENGTH=202 67 5e-12
AT1G17200.1 | chr1:5878493-5879871 FORWARD LENGTH=205 54 8e-08
AT3G14380.1 | chr3:4803175-4803799 REVERSE LENGTH=179 47 9e-06
>AT4G25830.1 | chr4:13133727-13134790 FORWARD LENGTH=176
Length = 175
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 57/87 (65%)
Query: 96 WTSFLLDKGCAYVVFASTAAALQACMVGLIGVEALQWSKLCNIYTRFCEQAAAGMLCSFL 155
W S+LLD+ AYVVFA T+AA Q ++ + G LQW K C +TRFC Q + ++ +++
Sbjct: 84 WFSYLLDQTAAYVVFAGTSAAAQHSLLVVTGSRELQWMKWCYKFTRFCFQMGSAIILNYI 143
Query: 156 AAAGMAVLSAFSARRLFRLYSPAGHRR 182
AAA M +LS+ SA LFRLYSP R
Sbjct: 144 AAALMVLLSSISAFNLFRLYSPKRFFR 170
>AT4G16442.1 | chr4:9272042-9272970 REVERSE LENGTH=183
Length = 182
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 1/170 (0%)
Query: 17 ERLLRGGCVVMAATAALLLGFSAETKTVLFVRKTAVAKDXXXXXXXXXXXXXXXXXXXXX 76
E LLR V A A +L+ E K + ++KTA D
Sbjct: 12 ELLLRCSISVFALLALILVVTDTEVKLIFTIKKTAKYTDMKAVVFLVVANGIAAVYSLLQ 71
Query: 77 XXRCMYCSSSGDA-GAMAVAWTSFLLDKGCAYVVFASTAAALQACMVGLIGVEALQWSKL 135
RC+ + G + +AW F D+ AY+ A+ AA ++ ++ G E LQW ++
Sbjct: 72 SVRCVVGTMKGKVLFSKPLAWAFFSGDQAMAYLNVAAIAATAESGVIAREGEEDLQWMRV 131
Query: 136 CNIYTRFCEQAAAGMLCSFLAAAGMAVLSAFSARRLFRLYSPAGHRRSCP 185
C +Y +FC Q A G+ + LA+ M +S SA LFRLY RR+ P
Sbjct: 132 CTMYGKFCNQMAIGVSSALLASIAMVFVSCISAFSLFRLYGATKDRRTTP 181
>AT2G35760.1 | chr2:15032059-15033094 FORWARD LENGTH=202
Length = 201
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 74/168 (44%), Gaps = 1/168 (0%)
Query: 17 ERLLRGGCVVMAATAALLLGFSAETKTVLFVRKTAVAKDXXXXXXXXXXXXXXXXXXXXX 76
E +LR V+A AA+L+ + + + ++K A D
Sbjct: 31 ELILRCLVCVLALVAAILIATDVQVREIFMIQKKAKFTDMKALVLLVVVNGIAAGYSLVQ 90
Query: 77 XXRCMYCSSSGDA-GAMAVAWTSFLLDKGCAYVVFASTAAALQACMVGLIGVEALQWSKL 135
RC+ G + +AW F D+ AY+ A AAA Q+ +G LQW K+
Sbjct: 91 AVRCVVGLMKGRVLFSKPLAWAIFFGDQAVAYLCVAGVAAAAQSAAFAKLGEPELQWMKI 150
Query: 136 CNIYTRFCEQAAAGMLCSFLAAAGMAVLSAFSARRLFRLYSPAGHRRS 183
CN+Y +FC Q G+ + A GM ++S SA +FRLY + R S
Sbjct: 151 CNMYGKFCNQVGEGIASALFACIGMVLISCISAFGVFRLYGGSKSRPS 198
>AT1G17200.1 | chr1:5878493-5879871 FORWARD LENGTH=205
Length = 204
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%)
Query: 89 AGAMAVAWTSFLLDKGCAYVVFASTAAALQACMVGLIGVEALQWSKLCNIYTRFCEQAAA 148
+ M WT F LD+ Y+V A+ A + + + G A+ WS C+ Y FC +A A
Sbjct: 99 SSTMPRVWTFFCLDQLLTYLVLAAGAVSAEVLYLAYNGDSAITWSDACSSYGGFCHRATA 158
Query: 149 GMLCSFLAAAGMAVLSAFSARRLFRLYSP 177
++ +F VLS S+ +LF + P
Sbjct: 159 SVIITFFVVCFYIVLSLISSYKLFTRFDP 187
>AT3G14380.1 | chr3:4803175-4803799 REVERSE LENGTH=179
Length = 178
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 97 TSFLLDKGCAYVVFASTAAALQACMVGLIGVEALQWSKLCNIYTRFCEQAAAGMLCSFLA 156
T FLLD+ YVV A+ A + + + G + WS C+ Y FC A ++ +F+
Sbjct: 97 TLFLLDQVVTYVVLAAGAVSAETVYLAYYGNIPITWSSACDSYGSFCHNALISVVFTFVV 156
Query: 157 AAGMAVLSAFSARRLF-RLYSP 177
+ +LS S+ RLF R +P
Sbjct: 157 SLLYMLLSLISSYRLFTRFEAP 178
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.133 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,962,897
Number of extensions: 85923
Number of successful extensions: 250
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 5
Length of query: 195
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 102
Effective length of database: 8,556,881
Effective search space: 872801862
Effective search space used: 872801862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 109 (46.6 bits)