BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0175900 Os02g0175900|AK064060
         (425 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G19270.1  | chr2:8360349-8361907 REVERSE LENGTH=360            134   1e-31

>AT2G19270.1 | chr2:8360349-8361907 REVERSE LENGTH=360
          Length = 359

 Score =  134 bits (336), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/89 (74%), Positives = 73/89 (82%), Gaps = 2/89 (2%)

Query: 338 MPAEILEVNQAELMKNRPREDKSKLTGMAFGPSYQPAPSA-KGKPSKLHKRKHQIGSLFY 396
           MP EI+EV Q ELMKNRPR D+ K TG+AFGP+YQP  S+ KGK SKLHKRKHQI +LF 
Sbjct: 272 MP-EIVEVKQDELMKNRPRVDQVKSTGIAFGPAYQPVTSSSKGKVSKLHKRKHQITALFM 330

Query: 397 DMKQKEMELAERRSKGFLTKAETQAKYGW 425
           DMK KE EL ERRS+G LTKAETQAKYGW
Sbjct: 331 DMKHKESELTERRSRGLLTKAETQAKYGW 359



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.308    0.129    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,861,130
Number of extensions: 313870
Number of successful extensions: 1671
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1671
Number of HSP's successfully gapped: 2
Length of query: 425
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 324
Effective length of database: 8,337,553
Effective search space: 2701367172
Effective search space used: 2701367172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 113 (48.1 bits)