BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0169900 Os02g0169900|AK070107
(364 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G31190.1 | chr1:11144861-11146800 FORWARD LENGTH=372 477 e-135
AT3G02870.1 | chr3:627742-629682 REVERSE LENGTH=272 126 2e-29
AT4G39120.1 | chr4:18225578-18227988 REVERSE LENGTH=376 73 2e-13
>AT1G31190.1 | chr1:11144861-11146800 FORWARD LENGTH=372
Length = 371
Score = 477 bits (1227), Expect = e-135, Method: Compositional matrix adjust.
Identities = 223/319 (69%), Positives = 266/319 (83%), Gaps = 4/319 (1%)
Query: 46 KARPVMAVASEQPAARGKCPKVAAPTTGPIPAAELLGVIQDAARAGAEVIMEAVNKPRNI 105
+ + V++ S+Q + P++ A TTG I A LL V++ AA+ GAEV+MEAVNKPRNI
Sbjct: 57 QTKAVLSEVSDQT----RYPRIGAKTTGTISPAHLLEVVELAAKTGAEVVMEAVNKPRNI 112
Query: 106 HYKGVADLVTDTDKLSESVILEVVRKTFPDHXXXXXXXXXXXDALSEYLWCIDPLDGTTN 165
YKG++DLVTDTDK SE+ ILEVV+K F DH D+ S+YLWCIDPLDGTTN
Sbjct: 113 TYKGLSDLVTDTDKASEAAILEVVKKNFSDHLILGEEGGIIGDSSSDYLWCIDPLDGTTN 172
Query: 166 FAHGYPSFSVSIGVLFRGKPAASTVVEFCGGPMCWSTRTVSASSGGGAYCNGQKIHVSKT 225
FAHGYPSF+VS+GVL+RG PAA++VVEF GGPMCW+TRT SA++GGGA CNGQKIHVSKT
Sbjct: 173 FAHGYPSFAVSVGVLYRGNPAAASVVEFVGGPMCWNTRTFSATAGGGALCNGQKIHVSKT 232
Query: 226 DKVEQSLLVTGFGYEHDDAWVTNINLFKEYTDISRGVRRLGSAAADMSHVALGITEAYWE 285
D VE++LL+TGFGYEHDDAW TN+ LFKE+TD+SRGVRRLG+AA DM HVALGI E+YWE
Sbjct: 233 DAVERALLITGFGYEHDDAWSTNMELFKEFTDVSRGVRRLGAAAVDMCHVALGIAESYWE 292
Query: 286 YRLKPWDMAAGVLIVEEAGGMVSRMDGGEFTVFDRSVLVSNGVVHDQLLDRIGPATEDLK 345
YRLKPWDMAAGVLIVEEAGG V+RMDGG+F+VFDRSVLVSNGV+H +LL+RI PATE+LK
Sbjct: 293 YRLKPWDMAAGVLIVEEAGGAVTRMDGGKFSVFDRSVLVSNGVLHPKLLERIAPATENLK 352
Query: 346 KKGIDFSLWFKPDKYPTDF 364
KGIDFSLWFKP+ Y T+
Sbjct: 353 SKGIDFSLWFKPEDYHTEL 371
>AT3G02870.1 | chr3:627742-629682 REVERSE LENGTH=272
Length = 271
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 121/239 (50%), Gaps = 11/239 (4%)
Query: 93 EVIMEAVNKPRNIHYKGVADLVTDTDKLSESVILEVVRKTFPDHX---XXXXXXXXXXDA 149
++I + + +++ +KG DLVT+TDK E ++ +++ FP+H +
Sbjct: 23 QIIRKGFYETKHVEHKGQVDLVTETDKGCEELVFNHLKQLFPNHKFIGEETTAAFGVTEL 82
Query: 150 LSEYLWCIDPLDGTTNFAHGYPSFSVSIGVLFRGKPAASTVVEFCGGPMCWSTRTVSASS 209
E W +DPLDGTTNF HG+P VSIG+ P V P+ T
Sbjct: 83 TDEPTWIVDPLDGTTNFVHGFPFVCVSIGLTIGKVPVVGVVYN----PIMEELFT--GVQ 136
Query: 210 GGGAYCNGQKIHVSKTDKVEQSLLVTGFGYEHDDAWVTN-INLFKEYTDISRGVRRLGSA 268
G GA+ NG++I VS ++ +LLVT G + D A + + N R +R GS
Sbjct: 137 GKGAFLNGKRIKVSAQSELLTALLVTEAGTKRDKATLDDTTNRINSLLTKVRSLRMSGSC 196
Query: 269 AADMSHVALGITEAYWEYRL-KPWDMAAGVLIVEEAGGMVSRMDGGEFTVFDRSVLVSN 326
A D+ VA G + ++E PWD+AAG++IV+EAGG++ G + + + + SN
Sbjct: 197 ALDLCGVACGRVDIFYELGFGGPWDIAAGIVIVKEAGGLIFDPSGKDLDITSQRIAASN 255
>AT4G39120.1 | chr4:18225578-18227988 REVERSE LENGTH=376
Length = 375
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 116/268 (43%), Gaps = 28/268 (10%)
Query: 59 AARGKCPKVAAPTTGPIPAAEL--LGVIQDA-ARAGAEVIMEAVNKPRNIHYKGVADLVT 115
A+ K P ++ + + EL + +A A A EVI + K +I K VT
Sbjct: 91 ASNSKRPNISNESPSELSDTELDRFAAVGNALADASGEVIRKYFRKKFDIVDKDDMSPVT 150
Query: 116 DTDKLSESVILEVVRKTFPDHXXXXXXXX-XXXDALSEYLWCIDPLDGTTNFAHGYPSFS 174
D+++E ++ ++ + P H + ++Y+W +DP+DGT +F G P F
Sbjct: 151 IADQMAEEAMVSIIFQNLPSHAIYGEEKGWRCKEESADYVWVLDPIDGTKSFITGKPVFG 210
Query: 175 VSIGVLFRGKPAASTVVEFCGGPMCWSTRTVSASSGGGAYCNGQKIHVSKTDKVEQSLLV 234
I +L++GKP ++ P+ R + +G NG+ I K+ Q+ L
Sbjct: 211 TLIALLYKGKP----ILGLIDQPIL-KERWIGM-NGRRTKLNGEDISTRSCPKLSQAYLY 264
Query: 235 TGFGYEHDDAWVTNINLFKE-----YTDISRGVR--RLGSAAADMSHVALGITEAYWEYR 287
T T+ +LF E Y+ + V+ G + +A G + E
Sbjct: 265 T-----------TSPHLFSEEAEKAYSRVRDKVKVPLYGCDCYAYALLASGFVDLVIESG 313
Query: 288 LKPWDMAAGVLIVEEAGGMVSRMDGGEF 315
LKP+D A V ++E AGG ++ G F
Sbjct: 314 LKPYDFLALVPVIEGAGGTITDWTGKRF 341
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.135 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,551,349
Number of extensions: 301099
Number of successful extensions: 621
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 619
Number of HSP's successfully gapped: 3
Length of query: 364
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 264
Effective length of database: 8,364,969
Effective search space: 2208351816
Effective search space used: 2208351816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)