BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0168300 Os02g0168300|AK103301
         (389 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G06660.1  | chr1:2037461-2040148 REVERSE LENGTH=482             89   6e-18
AT2G30820.1  | chr2:13129800-13132391 FORWARD LENGTH=422           87   1e-17
AT1G04030.1  | chr1:1040597-1042313 FORWARD LENGTH=435             54   2e-07

>AT1G06660.1 | chr1:2037461-2040148 REVERSE LENGTH=482
          Length = 481

 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 56/84 (66%), Gaps = 3/84 (3%)

Query: 309 DLPIFTASGLNWDNDKPTPVLPKVWDGNGIPNTTTKYKEDQKVSWHATPFEERLMKVLSD 368
           D PI       W  ++ T + PK+WDGNGIPN+TTKYKEDQKVSWHATPFE RL K LS+
Sbjct: 382 DRPIIGLVAAQWIENEQTEISPKMWDGNGIPNSTTKYKEDQKVSWHATPFEVRLEKALSE 441

Query: 369 EKPHH---QRKISGKLIQLDEETN 389
           E       QRK+   + +++ +T+
Sbjct: 442 EGGQSLFPQRKLEVMMEEVEGDTD 465



>AT2G30820.1 | chr2:13129800-13132391 FORWARD LENGTH=422
          Length = 421

 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 45/61 (73%)

Query: 309 DLPIFTASGLNWDNDKPTPVLPKVWDGNGIPNTTTKYKEDQKVSWHATPFEERLMKVLSD 368
           D PI      +W+  + + + PK WDGNGIPN+T KYKEDQKVSWHATPFEERL K LS+
Sbjct: 328 DRPIIGMVAAHWNEKEHSQISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSE 387

Query: 369 E 369
           E
Sbjct: 388 E 388



>AT1G04030.1 | chr1:1040597-1042313 FORWARD LENGTH=435
          Length = 434

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 33/58 (56%)

Query: 311 PIFTASGLNWDNDKPTPVLPKVWDGNGIPNTTTKYKEDQKVSWHATPFEERLMKVLSD 368
           PI    G  W N              GIPNT++KY+ED+ V+WH+TPFE RL K L++
Sbjct: 374 PIIGTVGGYWGNRSKAIDCGSASSFKGIPNTSSKYREDKSVNWHSTPFEARLEKALNN 431



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.310    0.129    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,850,539
Number of extensions: 460329
Number of successful extensions: 968
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 966
Number of HSP's successfully gapped: 3
Length of query: 389
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 289
Effective length of database: 8,364,969
Effective search space: 2417476041
Effective search space used: 2417476041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 113 (48.1 bits)