BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0160200 Os02g0160200|AK109618
(495 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G61320.1 | chr1:22617370-22619718 FORWARD LENGTH=460 55 9e-08
AT1G61330.1 | chr1:22622975-22624527 FORWARD LENGTH=448 54 1e-07
AT2G04230.1 | chr2:1447025-1448678 REVERSE LENGTH=449 52 6e-07
AT3G26922.1 | chr3:9922858-9923891 FORWARD LENGTH=307 50 3e-06
AT1G50980.1 | chr1:18900541-18902057 REVERSE LENGTH=371 50 3e-06
>AT1G61320.1 | chr1:22617370-22619718 FORWARD LENGTH=460
Length = 459
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 72/293 (24%), Positives = 120/293 (40%), Gaps = 41/293 (13%)
Query: 160 PIGSKLLARLSVRGLHLTASANAMVATLEVIHFHSVSLTDAALRRVVSACPRLRELELRY 219
P G KLL LS+ MV T++ I + C L LEL
Sbjct: 166 PKGLKLLKTLSL------MRTQVMVKTIDAI---------------FNNCIHLESLELIE 204
Query: 220 CRHLRRID--FTVGASNLKSLTVVDCSRATELRVP--SAPLLRSFRFSGAFLCSNIFGST 275
CR +D ++ A N K + S +LR AP L ++++ G +C NI +
Sbjct: 205 CR----MDGILSIRAQNHKKFKSLVVSFMPDLRHIRLDAPTLENYKYDGYVICVNILITN 260
Query: 276 ADCVEHLYLCSGGPETGLPRTNLPSAVPRLSNLTVLTLCSIALQYVSAS-VATPNVEK-- 332
A +LY + +++L + + LTVL +I L+ ++ V +E
Sbjct: 261 ALKEANLYY-TRIRRLYHQKSDLVDTLRFYTRLTVLATTTIFLEALTKRYVGEGRLENPP 319
Query: 333 -SLNSLRELQLLMFGMANSNLADIYSFLKACRCPQLERLFVQLPTNTYDSFTTNYXXXXX 391
+L E ++ L DI FLK CP+L+++ + + T++ +
Sbjct: 320 FKFENLTEFKISFITPTFCTLFDIAEFLK--ECPKLKQVVIDIQNFTFEPQMYFWEIHHK 377
Query: 392 XXXXXXXXXNLRL-----VKMTNFKGYRNELRLVDFLLRKASRLNKLFLIAPK 439
N L VK+ +KG+ +EL +V+F ++ A L +L L PK
Sbjct: 378 AQIQNTSNNNYLLKCLTDVKIIGYKGHWHELDIVEFFVKNAPSLKRLELQMPK 430
>AT1G61330.1 | chr1:22622975-22624527 FORWARD LENGTH=448
Length = 447
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 106/264 (40%), Gaps = 16/264 (6%)
Query: 187 LEVIHFHSVSLTDAALRRVVSACPRLRELELRYCRHLRRIDFTVGASNLKSLT--VVDCS 244
L+ + +T+ + + + C L LEL C+ T+ A + K VV C
Sbjct: 160 LKTLSLMRTEVTNEMIDSIFNNCIHLESLELVKCQMSGNGILTIYAHDHKKFKSLVVSCM 219
Query: 245 RATELRVPSAPLLRSFRFSGAFLCSNIFGSTA-DCVEHLYLCSG---GPETGLPRTNLPS 300
AP L +++ G N+ A + E Y S +T + S
Sbjct: 220 PNLLSIFLDAPTLECYKYDGYAKTINVLKVNALEEAEFHYSRSKRRHSSDTVVDSMLACS 279
Query: 301 AVPRLSNLTVLTLCSIALQYVSASVATPNVEKSLNSLRELQLLMFGMANSNLADIYSFLK 360
AV L+ +L L +I +Y+ + P + +LRE ++ L DI FLK
Sbjct: 280 AVHALTTTNIL-LEAITYRYLKGKLEKPLFK--FENLREFKIFFKAPTFCTLFDIAEFLK 336
Query: 361 ACRCPQLERLFVQLPTNTYDSFTTNYXXXXXXXXXXXXXXNLRL-----VKMTNFKGYRN 415
CP+LE+ + + T++ + N L VK+ +KG+ +
Sbjct: 337 --ECPKLEQFIIDIQNFTFEPQMYFWEIHHKAQIQNTSNNNYLLKCLTDVKIIGYKGHWH 394
Query: 416 ELRLVDFLLRKASRLNKLFLIAPK 439
EL +V+F ++ A L +L L PK
Sbjct: 395 ELDIVEFFVKNAPSLKRLELQMPK 418
>AT2G04230.1 | chr2:1447025-1448678 REVERSE LENGTH=449
Length = 448
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 27/35 (77%)
Query: 23 ISDLPDALRLQILSLLPLKSAIRTGALSSRWRGLW 57
ISDLPDAL LQILS LP ++AI T LS RWR LW
Sbjct: 15 ISDLPDALLLQILSSLPTENAIATSVLSKRWRSLW 49
>AT3G26922.1 | chr3:9922858-9923891 FORWARD LENGTH=307
Length = 306
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 27/36 (75%)
Query: 23 ISDLPDALRLQILSLLPLKSAIRTGALSSRWRGLWE 58
ISDLP+AL LQILS+LP+K + T LS WR LW+
Sbjct: 16 ISDLPEALLLQILSMLPVKDVVTTSVLSKPWRSLWK 51
>AT1G50980.1 | chr1:18900541-18902057 REVERSE LENGTH=371
Length = 370
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 23 ISDLPDALRLQILSLLPLKSAIRTGALSSRWRGLWE 58
IS+ PD + L+ILSLLP K + TG LS RWR LW+
Sbjct: 34 ISEFPDKVLLKILSLLPSKDVVATGVLSKRWRSLWK 69
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.137 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,381,184
Number of extensions: 297645
Number of successful extensions: 1568
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1573
Number of HSP's successfully gapped: 5
Length of query: 495
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 392
Effective length of database: 8,282,721
Effective search space: 3246826632
Effective search space used: 3246826632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 114 (48.5 bits)