BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0159400 Os02g0159400|AK109550
         (263 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G38630.1  | chr2:16154283-16156302 REVERSE LENGTH=468           67   9e-12
AT3G54190.1  | chr3:20061759-20063880 REVERSE LENGTH=468           65   2e-11

>AT2G38630.1 | chr2:16154283-16156302 REVERSE LENGTH=468
          Length = 467

 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 59/100 (59%)

Query: 164 KRSAVLQILPLKDLVAVVLCSGLSFLLSRVTNKMISILNRYDDEIIVSIFYNKEDKSVIT 223
           KRS V++I+  +D+V  +  SG+    SR TNK +  LN   DE+I S+FYNK + S+IT
Sbjct: 87  KRSKVIEIVAARDIVFALTLSGVCASFSRETNKKVCFLNVSPDEVIRSLFYNKNNDSLIT 146

Query: 224 TSSRLFDGCMSRQVTSTPLECIRSNKQNNGQQIFESENIK 263
            S    D   S +  ST +E I   + + G  +FESE++K
Sbjct: 147 VSVYASDNYSSLKCRSTRIEYILRGQADAGFPLFESESLK 186



>AT3G54190.1 | chr3:20061759-20063880 REVERSE LENGTH=468
          Length = 467

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 60/102 (58%)

Query: 162 IRKRSAVLQILPLKDLVAVVLCSGLSFLLSRVTNKMISILNRYDDEIIVSIFYNKEDKSV 221
           + KR+ V++I+  +D+V  +  SG+    SR +NK I  LN   DE+I S+FYNK + S+
Sbjct: 83  LMKRTKVIEIVAARDIVFALAHSGVCAAFSRESNKRICFLNVSPDEVIRSLFYNKNNDSL 142

Query: 222 ITTSSRLFDGCMSRQVTSTPLECIRSNKQNNGQQIFESENIK 263
           IT S    D   S +  ST +E I   + + G  +FESE++K
Sbjct: 143 ITVSVYASDNFSSLKCRSTRIEYILRGQPDAGFALFESESLK 184



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,617,709
Number of extensions: 227520
Number of successful extensions: 707
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 707
Number of HSP's successfully gapped: 2
Length of query: 263
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 166
Effective length of database: 8,447,217
Effective search space: 1402238022
Effective search space used: 1402238022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)