BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0158100 Os02g0158100|AK073124
(543 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G05520.1 | chr4:2804522-2807833 FORWARD LENGTH=547 884 0.0
AT3G20290.1 | chr3:7075057-7078655 REVERSE LENGTH=546 881 0.0
AT1G21630.2 | chr1:7581457-7587796 FORWARD LENGTH=1248 72 6e-13
AT1G20760.1 | chr1:7209515-7214773 FORWARD LENGTH=1020 67 3e-11
>AT4G05520.1 | chr4:2804522-2807833 FORWARD LENGTH=547
Length = 546
Score = 884 bits (2285), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/542 (76%), Positives = 470/542 (86%), Gaps = 4/542 (0%)
Query: 3 LARSACSKEHHKIYAGWFAVADPDGDGRVTGADATKFFAMSGLSRADLKQVWAIADTKRQ 62
++ +C KEH KIY WF +AD DGDGRV+G DATKFFAMS LSR +LKQVWA+AD+KRQ
Sbjct: 7 ISIGSCLKEHQKIYKEWFNIADSDGDGRVSGNDATKFFAMSKLSRQELKQVWAVADSKRQ 66
Query: 63 GFLGFGEFVAAMQLVSLAQAGEEITQDSLKRE-DLSSLDPPVMEGLDELLARSKAGVKRV 121
GFLG EF+ AM+LVSLAQ G EIT D LK D+ S++ PV+EGL+ ++++ K V
Sbjct: 67 GFLGLSEFITAMKLVSLAQEGHEITSDLLKGSIDMKSVELPVLEGLENVVSKQKVSKTNV 126
Query: 122 HPEENGAPQVQVHSANSWFSSKSAKKMQVPLTAVTSVIDGLKRLYVEKLKPLEVAYRFND 181
E+N + QV + WF SKS K QV V +++DGLKRLY EKLKPLEV YRFND
Sbjct: 127 DVEDNVVTKPQVTAKTPWFKSKSIIKPQV---NVVTIVDGLKRLYTEKLKPLEVTYRFND 183
Query: 182 FASPLLTSSDFDAKPMVMLLGQYSTGKTTFIKHLLQTSYPGAHVGPEPTTDRFVVVMSGS 241
FASP+LTSSDFDAKPMVMLLGQYSTGKTTFIKHLL YPGAH+GPEPTTDRFVV MSG
Sbjct: 184 FASPVLTSSDFDAKPMVMLLGQYSTGKTTFIKHLLGCDYPGAHIGPEPTTDRFVVAMSGP 243
Query: 242 DERTIPGNTIAVQADMPFTGLTTFGGAFLSKFECSQMPHPLLDHITFVDTPGVLSGEKQR 301
DERTIPGNT+AVQADMPF GLT+FGGAFLSKFECSQMPHP+LD IT VDTPGVLSGEKQR
Sbjct: 244 DERTIPGNTMAVQADMPFNGLTSFGGAFLSKFECSQMPHPVLDQITLVDTPGVLSGEKQR 303
Query: 302 TQRSYDFTGITSWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGHDDKIRVVLNKADQV 361
QRSYDFTG+ SWFA+KCD+ILLLFDPHKLDISDEFKRVI SLRG++DKIRVVLNKADQV
Sbjct: 304 MQRSYDFTGVISWFASKCDMILLLFDPHKLDISDEFKRVITSLRGNEDKIRVVLNKADQV 363
Query: 362 DTQQLMRVYGALMWSLGKVLNTPEVARVYIGSFNDKPVNESAVGPIGKDLFEKEQDDLLC 421
DTQQLMRVYGALMWSLGKVLNTPEV RVYIGSFNDKP+NE AVGPIGK+LFEKEQ+DLL
Sbjct: 364 DTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPINEVAVGPIGKELFEKEQNDLLA 423
Query: 422 DLKDIPKKACDRRVNEFVKRARAAKIHAYIIGHLKKEMPAMMGKAKAQQRLIDNLGDEFA 481
DL D+PKKACDR++NEFVKRAR+AKI+AYI+ HLKKEMPAMMGK+KAQQRL+DNL +EF
Sbjct: 424 DLMDVPKKACDRKINEFVKRARSAKINAYIMSHLKKEMPAMMGKSKAQQRLMDNLEEEFG 483
Query: 482 KVQREYHLPAGDFPDVEHFKEVLGGYNIDKFEKMKPKLVQAVDDMLAYDIPELLKNFRNP 541
KVQRE+HLPAGDFP VEHF+EVLGGYNIDKFEK+KPK++QAVDDML YDIP+LLK FRNP
Sbjct: 484 KVQREFHLPAGDFPSVEHFREVLGGYNIDKFEKLKPKMIQAVDDMLGYDIPDLLKKFRNP 543
Query: 542 YE 543
Y+
Sbjct: 544 YD 545
>AT3G20290.1 | chr3:7075057-7078655 REVERSE LENGTH=546
Length = 545
Score = 881 bits (2277), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/542 (77%), Positives = 480/542 (88%), Gaps = 3/542 (0%)
Query: 3 LARSACSKEHHKIYAGWFAVADPDGDGRVTGADATKFFAMSGLSRADLKQVWAIADTKRQ 62
+A +CSKE+ IY WF +D DGDGR+TG DA KFF MS L R +LKQ+WAIAD+KRQ
Sbjct: 6 VAAGSCSKENQMIYKEWFEFSDSDGDGRITGNDAIKFFTMSNLPRPELKQIWAIADSKRQ 65
Query: 63 GFLGFGEFVAAMQLVSLAQAGEEITQDSLKRE-DLSSLDPPVMEGLDELLARSKAGVKRV 121
G+LGF EF+ AMQLVSLAQ G EI+ + L + D +++PP MEGL L+A+ K K
Sbjct: 66 GYLGFKEFIVAMQLVSLAQTGHEISHEVLISDVDFKNINPPTMEGLGVLMAKKKHSSKSS 125
Query: 122 HPEENGAPQVQVHSANSWFSSKSAKKMQVPLTAVTSVIDGLKRLYVEKLKPLEVAYRFND 181
P NG+P WFSSKS+KK+ + ++VTS++DGLKRLY++KLKPLEVAYRFND
Sbjct: 126 DPNMNGSPAADTSLTAHWFSSKSSKKISL--SSVTSIVDGLKRLYIQKLKPLEVAYRFND 183
Query: 182 FASPLLTSSDFDAKPMVMLLGQYSTGKTTFIKHLLQTSYPGAHVGPEPTTDRFVVVMSGS 241
F SPLLT+SDFDAKPMVMLLGQYSTGKTTFIKHLL+++YPGAH+GPEPTTDRFVVVMSG
Sbjct: 184 FVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLKSTYPGAHIGPEPTTDRFVVVMSGP 243
Query: 242 DERTIPGNTIAVQADMPFTGLTTFGGAFLSKFECSQMPHPLLDHITFVDTPGVLSGEKQR 301
DER+IPGNT+AVQADMPF+GLTTFG AFLSKFECSQMPHPLL+H+TFVDTPGVLSGEKQR
Sbjct: 244 DERSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHPLLEHVTFVDTPGVLSGEKQR 303
Query: 302 TQRSYDFTGITSWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGHDDKIRVVLNKADQV 361
TQR+YDFTG+TSWFA+KCDLILLLFDPHKLD+SDEFKRVI+SLRGHDDKIRVVLNKADQV
Sbjct: 304 TQRAYDFTGVTSWFASKCDLILLLFDPHKLDVSDEFKRVISSLRGHDDKIRVVLNKADQV 363
Query: 362 DTQQLMRVYGALMWSLGKVLNTPEVARVYIGSFNDKPVNESAVGPIGKDLFEKEQDDLLC 421
DTQQLMRVYGALMWSLGKVLNTPEV+RVYIGSF+DKP+NE+A GPIG++LFEKEQDDLL
Sbjct: 364 DTQQLMRVYGALMWSLGKVLNTPEVSRVYIGSFSDKPINEAATGPIGRELFEKEQDDLLA 423
Query: 422 DLKDIPKKACDRRVNEFVKRARAAKIHAYIIGHLKKEMPAMMGKAKAQQRLIDNLGDEFA 481
DLKDIPKKACDRR+NEFVKRARAAKIHAYII HLKKEMPA+MGKAKAQQ+LIDNL DEF
Sbjct: 424 DLKDIPKKACDRRINEFVKRARAAKIHAYIISHLKKEMPAIMGKAKAQQKLIDNLEDEFG 483
Query: 482 KVQREYHLPAGDFPDVEHFKEVLGGYNIDKFEKMKPKLVQAVDDMLAYDIPELLKNFRNP 541
KVQRE+HLP GDFP+V+HF+EVL GYNIDKFEK+KPK++Q VDDML YDIPELLKNF+NP
Sbjct: 484 KVQREHHLPKGDFPNVDHFREVLSGYNIDKFEKLKPKMLQTVDDMLGYDIPELLKNFKNP 543
Query: 542 YE 543
Y+
Sbjct: 544 YD 545
>AT1G21630.2 | chr1:7581457-7587796 FORWARD LENGTH=1248
Length = 1247
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 53/78 (67%)
Query: 15 IYAGWFAVADPDGDGRVTGADATKFFAMSGLSRADLKQVWAIADTKRQGFLGFGEFVAAM 74
++ +F AD DGDG ++GA+A FF S L + L QVW+ AD+K+ G+LG EF A+
Sbjct: 12 LFDTYFRRADLDGDGHISGAEAVAFFQGSNLPKHVLAQVWSYADSKKAGYLGRAEFYNAL 71
Query: 75 QLVSLAQAGEEITQDSLK 92
+LV++AQ+ E+T + +K
Sbjct: 72 KLVTVAQSRRELTAEIVK 89
>AT1G20760.1 | chr1:7209515-7214773 FORWARD LENGTH=1020
Length = 1019
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 48/72 (66%)
Query: 16 YAGWFAVADPDGDGRVTGADATKFFAMSGLSRADLKQVWAIADTKRQGFLGFGEFVAAMQ 75
+ +F AD DGDGR++GA+A FF SGLS+ L Q+W+++D GFL F +++
Sbjct: 11 FEAYFKRADLDGDGRISGAEAVGFFQGSGLSKQVLAQIWSLSDRSHSGFLDRQNFYNSLR 70
Query: 76 LVSLAQAGEEIT 87
LV++AQ+ ++T
Sbjct: 71 LVTVAQSKRDLT 82
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,998,652
Number of extensions: 515406
Number of successful extensions: 1358
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1355
Number of HSP's successfully gapped: 4
Length of query: 543
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 440
Effective length of database: 8,282,721
Effective search space: 3644397240
Effective search space used: 3644397240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)