BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0157600 Os02g0157600|J100044P04
(139 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G17850.1 | chr2:7760005-7760787 REVERSE LENGTH=157 98 1e-21
AT2G21045.1 | chr2:9027858-9028805 FORWARD LENGTH=170 97 3e-21
AT5G66040.1 | chr5:26410557-26411139 FORWARD LENGTH=121 92 1e-19
AT5G66170.2 | chr5:26447828-26448586 FORWARD LENGTH=139 91 2e-19
AT4G35770.1 | chr4:16945073-16945983 FORWARD LENGTH=183 80 3e-16
>AT2G17850.1 | chr2:7760005-7760787 REVERSE LENGTH=157
Length = 156
Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 74/117 (63%), Gaps = 3/117 (2%)
Query: 25 VDAGEVRELMSSGHHYLDVRLGKDFDKAHADG--ARNISYYLSVTPSGKEKNPHFVDEVA 82
+D + ++L+ SG+ +LDVR ++F K H D N+ Y+L TP G+E NP+F+ V+
Sbjct: 35 IDVNQAQKLLDSGYTFLDVRTVEEFKKGHVDSENVFNVPYWL-YTPQGQEINPNFLKHVS 93
Query: 83 SLFGKDEHLIVACNTGVRSRLATKDLLDAGFKNVRNLKGGYQSFLRSESQQPAAHQQ 139
SL + +HLI+ C +GVRS ATK L+ +GFK VRN+ GGY +++ H++
Sbjct: 94 SLCNQTDHLILGCKSGVRSLHATKFLVSSGFKTVRNMDGGYIAWVNKRFPVKVEHKE 150
>AT2G21045.1 | chr2:9027858-9028805 FORWARD LENGTH=170
Length = 169
Score = 97.1 bits (240), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Query: 17 KELEALPIVDAGEVRELMSSGHHYLDVRLGKDFDKAHADGARNISYYLSVTPSGKEKNPH 76
K +E + VD + +S+GH YLDVR ++F K+H + A NI Y T G+ NP
Sbjct: 36 KTVEDVETVDVYTAKGFLSTGHRYLDVRTNEEFAKSHVEEALNIPYMFK-TDEGRVINPD 94
Query: 77 FVDEVASLFGKDEHLIVACNTGVRSRLATKDLLDAGFKNVRNLKGGYQSFL 127
F+ +VAS+ KDEHLIVACN G R A DLL+ G+ +V N+ GGY +++
Sbjct: 95 FLSQVASVCKKDEHLIVACNAGGRGSRACVDLLNEGYDHVANMGGGYSAWV 145
>AT5G66040.1 | chr5:26410557-26411139 FORWARD LENGTH=121
Length = 120
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 67/97 (69%), Gaps = 1/97 (1%)
Query: 32 ELMSSGHHYLDVRLGKDFDKAHADGARNISYYLSVTPSGKEKNPHFVDEVASLFGKDEHL 91
+L+ +GH YLDVR ++F + HA GA N+ Y ++ SG KNP F+++V+S FG+ +++
Sbjct: 18 DLLLAGHRYLDVRTPEEFSQGHACGAINVPY-MNRGASGMSKNPDFLEQVSSHFGQSDNI 76
Query: 92 IVACNTGVRSRLATKDLLDAGFKNVRNLKGGYQSFLR 128
IV C +G RS AT DLL AGF V+++ GGY ++ +
Sbjct: 77 IVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAK 113
>AT5G66170.2 | chr5:26447828-26448586 FORWARD LENGTH=139
Length = 138
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 76/123 (61%), Gaps = 11/123 (8%)
Query: 25 VDAGEVRELMSSGHHYLDVRLGKDFDKAHADGAR--NISYYLSVTPSGKEKNPHFVDEVA 82
VD + + L+ SGH YLDVR +F + H + A+ NI Y L+ TP G+ KN F+++V+
Sbjct: 17 VDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLN-TPQGRVKNQEFLEQVS 75
Query: 83 SLFGKDEHLIVACNTGVRSRLATKDLLDA--GFKNVRNLKGGYQSF------LRSESQQP 134
SL + ++V C +G RS AT +L+ A G+K VRN+ GGY ++ + +E ++P
Sbjct: 76 SLLNPADDILVGCQSGARSLKATTELVAAVSGYKKVRNVGGGYLAWVDHSFPINTEEEEP 135
Query: 135 AAH 137
+A+
Sbjct: 136 SAN 138
>AT4G35770.1 | chr4:16945073-16945983 FORWARD LENGTH=183
Length = 182
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 31 RELMSSGHHYLDVRLGKDFDKAHADGARNISYYLSVTPSGKEKNPHFVDEVASLFGKDEH 90
REL +G+ YLDVR +F H A N+ Y V SG KNP F+ +V+S F K +
Sbjct: 79 RELAQAGYRYLDVRTPDEFSIGHPTRAINVPYMYRVG-SGMVKNPSFLRQVSSHFRKHDE 137
Query: 91 LIVACNTGVRSRLATKDLLDAGFKNVRNLKGGYQSFLRSE 130
+I+ C +G S +A+ DLL AGF + ++ GGY ++ +E
Sbjct: 138 IIIGCESGQMSFMASTDLLTAGFTAITDIAGGYVAWTENE 177
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.132 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,828,604
Number of extensions: 111469
Number of successful extensions: 188
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 5
Length of query: 139
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 51
Effective length of database: 8,693,961
Effective search space: 443392011
Effective search space used: 443392011
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 106 (45.4 bits)