BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0152600 Os02g0152600|AK073007
         (281 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G53760.1  | chr1:20069159-20070918 REVERSE LENGTH=273          279   9e-76

>AT1G53760.1 | chr1:20069159-20070918 REVERSE LENGTH=273
          Length = 272

 Score =  279 bits (714), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 137/280 (48%), Positives = 189/280 (67%), Gaps = 9/280 (3%)

Query: 1   MQARVVVFPVKGRAWCFXXXXXXXXXXXXXXXXXXXXXXXXXXTVKDLWRGIAGGGRTAS 60
           M+AR+VVFP+KG+ WCF                          TV+ LW+ I+   +  +
Sbjct: 1   MRARLVVFPIKGKKWCFSRSVDPFAAQSPSGVTPT--------TVRGLWKKISSESKPIN 52

Query: 61  ENAEAVVDFVADKMNRAWIGFGSAPEGSMKNRIHSFGLKLLSRVRPSEVLLKSVTKDVSL 120
            NAE +VDF++DKMN+AW+G   AP+GS+KN+IH FGLKLL+RV+PSE+ LKS++K+V+ 
Sbjct: 53  ANAELLVDFISDKMNKAWVGLEKAPDGSIKNKIHGFGLKLLARVKPSEIFLKSISKEVTS 112

Query: 121 LEIVHPASINPRLVRRRLRHIAVRGASVHRKFLYGSVCLLPVTSVFMVLPLPNIPFFWVL 180
           +++ +P S++PRLVRRRLRHIA+ G  +H+K+L GSV LLP+TS FMVLPLPNIPFFWVL
Sbjct: 113 VQVTYPPSLDPRLVRRRLRHIAMSGTILHKKYLVGSVTLLPLTSAFMVLPLPNIPFFWVL 172

Query: 181 FRAYSHWRALQGSERLQLLVSDSSDQWKILLEKQKEMSSRKDGNPCENTQYAPWNLQPSK 240
           FR YSHWRALQGSE+L  L+S+ ++  K       + S   +  P + +Q     L PS+
Sbjct: 173 FRTYSHWRALQGSEKLLKLISNEANPDKPDSTDDADESKNSNTKPEQKSQSPTCILLPSE 232

Query: 241 KLDGFLESRKLNEGLDCDTISRICQAYDLDKIDVLKYRDL 280
           +L   +      EGLD  TI  IC+++DL+K DVLKYR+L
Sbjct: 233 ELYQLIREAS-EEGLDEATIIEICKSFDLNKNDVLKYRNL 271



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,494,522
Number of extensions: 215693
Number of successful extensions: 522
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 520
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 184
Effective length of database: 8,447,217
Effective search space: 1554287928
Effective search space used: 1554287928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 111 (47.4 bits)