BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0149600 Os02g0149600|AK119431
(666 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G27100.1 | chr2:11572587-11576357 FORWARD LENGTH=721 479 e-135
>AT2G27100.1 | chr2:11572587-11576357 FORWARD LENGTH=721
Length = 720
Score = 479 bits (1232), Expect = e-135, Method: Compositional matrix adjust.
Identities = 261/538 (48%), Positives = 336/538 (62%), Gaps = 73/538 (13%)
Query: 196 NTRRKGLMTYKQFTQKLEDDVSPGEAESRYQEYKTSYITSQKQDYFDHHKNEDRLKDMYH 255
N +R GLM+YKQF Q+LEDD+ P EAE RYQEYK+ YIT+QK+ +F+ HK ED LK+ YH
Sbjct: 189 NPQRDGLMSYKQFIQELEDDILPSEAERRYQEYKSEYITTQKRAFFNTHKEEDWLKNKYH 248
Query: 256 PTNLLSVIERRNELCKAAAKNLILDLRSGTLDLGPGMTAGTASKSGNDSDGIPADDEDYH 315
PTNLLSVIERRN+L + AK+ +LDL+SGTLDLGP +TA +KSG S+ D+
Sbjct: 249 PTNLLSVIERRNDLAQKVAKDFLLDLQSGTLDLGPAVTA--LNKSGRTSEPNSEDEAAGV 306
Query: 316 NKRRRHHRGPLEETELVSVAPKAHPVSSHYRRIQTDIHQTLALVKKLDEEKGIVGNILTT 375
KR+RH G +E EL+S APKA +S +RI TD+ QT ALV+KLD EK I N+L
Sbjct: 307 GKRKRHGMGGAKENELLSAAPKAPSFTSDPKRILTDVEQTQALVRKLDSEKKIEENVLQG 366
Query: 376 GDHTKSNGDKSYAGSTGPLVIVRGLSTVKGLDGFELLDTLLTYLWHVHGIDYYGMSESTN 435
+ KS +K ++GSTGP+VI+RGL++VKGL+G ELLDTL+TYLW VHG+DYYG E+
Sbjct: 367 SETEKSGREKLHSGSTGPVVIIRGLTSVKGLEGVELLDTLVTYLWRVHGLDYYGKVETNE 426
Query: 436 AKGLRHVRADTKNANMDKSSAADWEKKLDYFWQERLTNGKDPLVALTAKDKIDASADKVL 495
AKGLRHVRA+ K ++ + + E K D WQERL G+DPL + AK+KIDA+A + L
Sbjct: 427 AKGLRHVRAEGKVSD---AKGDENESKFDSHWQERL-KGQDPLEVMAAKEKIDAAATEAL 482
Query: 496 ESYVTKVKDDNYGWTYGCGAKGCIKVFHAPDFVLKHLNLKHPDLVSKLTSRVQEDIYFQN 555
+ +V K++D+ YGW YGCGAKGC K+FHA +FV KHL LKH +LV++LT++V+E++YFQN
Sbjct: 483 DPHVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVYKHLKLKHTELVTELTTKVREELYFQN 542
Query: 556 YMNDPNAPGGTPVMQQQSP---------------------------------------EQ 576
YMNDPNAPGG P QQ P +Q
Sbjct: 543 YMNDPNAPGGQPATQQSGPRDRPIRRKPSMENRLRDDRGGRRERDGRANGNDRNDRSEDQ 602
Query: 577 Q-----GPTPSELTPGAFGGQGS------FVEMPTPPVLIPVPGAGPLGPFVPAXXXXXX 625
Q G P E+ AFGGQG ++ PP+L+PVPGAGPLGPFVPA
Sbjct: 603 QRGDNDGGNPGEVGYDAFGGQGGVHVPPFLSDINPPPMLMPVPGAGPLGPFVPAPPEVAM 662
Query: 626 XXXXXXXX-----------------XXXXXXXXXXXXXSYKDLDAPDDEVTLVDYRSL 666
SY+DLDAP++EVT++DYRSL
Sbjct: 663 QMFRDPSGPNPPFEGSGRGGPAPFLLSPAFRQDPRRLRSYQDLDAPEEEVTVIDYRSL 720
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.132 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,514,604
Number of extensions: 583911
Number of successful extensions: 1293
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1291
Number of HSP's successfully gapped: 2
Length of query: 666
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 561
Effective length of database: 8,227,889
Effective search space: 4615845729
Effective search space used: 4615845729
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 115 (48.9 bits)