BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0148300 Os02g0148300|AK071342
         (304 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G31570.1  | chr4:15297061-15306036 FORWARD LENGTH=2731         160   5e-40
AT1G24460.1  | chr1:8666072-8672338 FORWARD LENGTH=1808            87   1e-17

>AT4G31570.1 | chr4:15297061-15306036 FORWARD LENGTH=2731
          Length = 2730

 Score =  160 bits (406), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 113/317 (35%), Positives = 161/317 (50%), Gaps = 29/317 (9%)

Query: 2    LQEKEFALKSLEVSRTKALTKLATTVDKFDXXXXXXXXXXXXXXXXQSQLQERDSEISFL 61
            +Q+K   L+  E SR K   KL+ TVDKFD                Q Q+Q+RD+E+SFL
Sbjct: 2428 VQQKNLDLQKAEASRGKISKKLSITVDKFDELHHLSENLLAEIEKLQQQVQDRDTEVSFL 2487

Query: 62   RQEITRSTNELLTTEE-SNKKYSSQINDFTKWLETALLQFSVHCDSTNDYECTQVPVYMD 120
            RQE+TR TNE L   +   K+ S +I     W +T      +    + D + + +  YM+
Sbjct: 2488 RQEVTRCTNEALAASQMGTKRDSEEIQTVLSWFDTIASLLGIEDSLSTDAD-SHINHYME 2546

Query: 121  MLEKKIGSLISESDELRVTLQSKDSLLQAERTRMEELLRKSEALESSLSQKDSQIGLLRR 180
              EK+I S++SE DELR+  QSKD LL+ ER+R+ EL +K   LE  L +K+SQ     +
Sbjct: 2547 TFEKRIASMLSEIDELRLVGQSKDVLLEGERSRVAELRQKEATLEKFLLEKESQ-----Q 2601

Query: 181  DRTSGQPSRFINLPGTSEIEQVNEKVSPAAVVTQIRGARKVNTDQVAIXXXXXXXXXXXX 240
            D ++   S  +      E+E +  K +  ++ +Q+R  RK N DQVAI            
Sbjct: 2602 DISTSSTSEIV------EVEPLINKWTKTSIPSQVRSLRKGNMDQVAISIDADQTDQSGS 2655

Query: 241  XXX---XAHGFK----------SLTMSHIVPKFTRPISDRIDGMWVSGDRLLMRQPTLRL 287
                    H  +          SLT S +  +       R     VS DR LMRQP LRL
Sbjct: 2656 LEEDDDKDHSLRQESFLDSQDPSLTWSMVYGQTLFIHGSR---SVVSCDRTLMRQPALRL 2712

Query: 288  GVLLYWIVLHALLASFI 304
            G++LYW +LHALLA+F+
Sbjct: 2713 GIMLYWAILHALLAAFV 2729



>AT1G24460.1 | chr1:8666072-8672338 FORWARD LENGTH=1808
          Length = 1807

 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 123/261 (47%), Gaps = 33/261 (12%)

Query: 49   SQLQERDSEISFLRQEITRSTNELLTTEESNKKYSSQINDFTKWLETALLQFSVHCDSTN 108
            S L E+D EI  L+    ++T    TTE    K  ++++     LE  LL      +   
Sbjct: 1550 STLAEKDLEIQGLK----KATEAESTTELELVKAKNELSKLISGLEK-LLGILASNNPVV 1604

Query: 109  DYECTQVPVYMDMLEKKIGSLISESD-------ELRVTLQSKDSLLQAERTRMEELLRKS 161
            D   ++    +  LEKKI SL+ ES+       EL + L   + L+     R++E     
Sbjct: 1605 DPNFSESWTLVQALEKKITSLLLESESSKSRAQELGLKLAGSEKLVDKLSLRVKEF---E 1661

Query: 162  EALESSLSQKDSQIGLLRRDRTSGQPSRFINLPGTSEIEQVNEK-------VSPAAVVTQ 214
            E L++   Q D     + ++R+  +  R    P TSEI ++ +K       +SP     Q
Sbjct: 1662 EKLQTKAIQPD-----IVQERSIFETPRA---PSTSEISEIEDKGALGIKSISPVPTAAQ 1713

Query: 215  IRGARKVNTDQVAIXXXXXXX---XXXXXXXXXAHGFKSLTMSHIVPKFTRPISDRIDGM 271
            +R  RK +TD ++I                    H FKSL MS ++P   + I+DR+DG+
Sbjct: 1714 VRTVRKGSTDHLSINIDSESEHLMNNNETDEDKGHVFKSLNMSGLIPTQGKIIADRVDGI 1773

Query: 272  WVSGDRLLMRQPTLRLGVLLY 292
            WVSG R+LM +P  RLGV++Y
Sbjct: 1774 WVSGGRVLMSRPQARLGVMVY 1794



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.129    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,013,121
Number of extensions: 173279
Number of successful extensions: 844
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 839
Number of HSP's successfully gapped: 3
Length of query: 304
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 206
Effective length of database: 8,419,801
Effective search space: 1734479006
Effective search space used: 1734479006
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)