BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0147700 Os02g0147700|AK059340
         (342 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24630.6  | chr5:8432523-8435682 REVERSE LENGTH=455            189   3e-48

>AT5G24630.6 | chr5:8432523-8435682 REVERSE LENGTH=455
          Length = 454

 Score =  189 bits (479), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 85/133 (63%), Positives = 113/133 (84%), Gaps = 3/133 (2%)

Query: 159 SQRLPLIIPDKIQRSKALIECDGDSIDLSGDVGAVGRIIISNSPNGNQELLLDLKGTIYK 218
           S RLPL++ +K+ R+K L+EC+GDSIDLSGD+GAVGR+++S++     ++ LDLKGTIYK
Sbjct: 272 SSRLPLVLSEKVNRTKVLVECEGDSIDLSGDMGAVGRVVVSDTTG---DMYLDLKGTIYK 328

Query: 219 STIVPSRTFCVVSVGQTEAKIESIMDDFIQLEPQSNLFEAETMMEGTLDGFTFDSDEEGD 278
           STI+PSRTFCVV+VGQTEAKIE+IM+DFIQL PQSN++EAETM+EGTL+GFTF+SD+E +
Sbjct: 329 STIIPSRTFCVVNVGQTEAKIEAIMNDFIQLIPQSNVYEAETMVEGTLEGFTFESDDESN 388

Query: 279 KLPEPHASQNDQN 291
           K  +      DQ+
Sbjct: 389 KNAKTAVKPADQS 401



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.305    0.127    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,087,063
Number of extensions: 304982
Number of successful extensions: 924
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 924
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 243
Effective length of database: 8,392,385
Effective search space: 2039349555
Effective search space used: 2039349555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 112 (47.8 bits)