BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0142300 Os02g0142300|AK067944
(737 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G64270.1 | chr5:25706909-25710718 FORWARD LENGTH=1270 1347 0.0
>AT5G64270.1 | chr5:25706909-25710718 FORWARD LENGTH=1270
Length = 1269
Score = 1347 bits (3486), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 666/733 (90%), Positives = 690/733 (94%)
Query: 1 MKPEDYQYFGTLLNXXXXXXXXXXXXXXRKIMKLLLKVKNGTPPQRKTALRQLTDKAREF 60
MKPEDYQYFG+LLN RKIMKLLLKVKNGTPPQRKTALRQLTDKARE
Sbjct: 431 MKPEDYQYFGSLLNEENEEELSPEEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKAREL 490
Query: 61 GAGPLFNKILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPFVHKILVVIEPLLIDED 120
GAGPLFNKILPLLMQPTLEDQERHLLVKVIDR+LYKLDE+VRP+VHKILVVIEPLLIDED
Sbjct: 491 GAGPLFNKILPLLMQPTLEDQERHLLVKVIDRILYKLDEMVRPYVHKILVVIEPLLIDED 550
Query: 121 YYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLP 180
YYARVEGREIISNLSKAAGLA+MIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLP
Sbjct: 551 YYARVEGREIISNLSKAAGLASMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLP 610
Query: 181 FLKAVCQSKKSWQARHTGIKIVQQIAILMGCAVLPHLESVVEIIEHGLSDENQKVRTITX 240
FLKAVCQSK+SWQARHTGIKIVQQIAIL+GCAVLPHL S+VEIIEHGLSDENQKVRTIT
Sbjct: 611 FLKAVCQSKRSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLSDENQKVRTITA 670
Query: 241 XXXXXXXXXXXPYGIESFDTVLKPLWKGIRSNRGKVLAAFLKAIGFIIPLMDALYASYYT 300
PYGIESFD+VLKPLWKGIRS+RGKVLAAFLKAIGFIIPLMDA+YASYYT
Sbjct: 671 LSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDAIYASYYT 730
Query: 301 KEVMQILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIWNDILPEFFHHFWVRRMALD 360
KEVM ILIREFQSPDEEMKKIVLKVVKQCVSTEGVE +YI +DILPEFF +FW R+MAL+
Sbjct: 731 KEVMVILIREFQSPDEEMKKIVLKVVKQCVSTEGVEPEYIRSDILPEFFRNFWTRKMALE 790
Query: 361 RRNYKQLVETTVEMANKVGVADIVGRIVEDLKDESEPYRRMVMETVEKVVANLGASDIDA 420
RRNYKQLVETTVE+ANKVGVADIVGR+VEDLKDESE YRRMVMET++KVV NLGASDIDA
Sbjct: 791 RRNYKQLVETTVEVANKVGVADIVGRVVEDLKDESEQYRRMVMETIDKVVTNLGASDIDA 850
Query: 421 RLEELLIDGILYAFQEQASDDANVMLNGFGAVVNALGQGVKPYLPQICGTIKWRLNNKSA 480
RLEELLIDGILYAFQEQ SDDANVMLNGFGAVVNALGQ VKPYLPQICGTIKWRLNNKSA
Sbjct: 851 RLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNALGQRVKPYLPQICGTIKWRLNNKSA 910
Query: 481 KVRQQAADLISRIAIVMKHCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG 540
KVRQQAADLISRIA+VMK C EEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG
Sbjct: 911 KVRQQAADLISRIAVVMKQCGEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG 970
Query: 541 MTKMTPLIKNLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEM 600
MTKMTP IK+LLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEM
Sbjct: 971 MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEM 1030
Query: 601 LKAHKKGIRRATVNTFGYIAKAIGLQDVLATLLNYLKVQERQNRVCTTVAIAIVAETCSP 660
LKAHKKGIRRATVNTFGYIAKAIG QDVLATLLN LKVQERQNRVCTTVAIAIVAETCSP
Sbjct: 1031 LKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP 1090
Query: 661 FTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLVDDALMDRDLVHW 720
FTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPL++DALMDRDLVH
Sbjct: 1091 FTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHR 1150
Query: 721 QTAASAVKHMALG 733
QTAASAVKHMALG
Sbjct: 1151 QTAASAVKHMALG 1163
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.138 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,365,032
Number of extensions: 571414
Number of successful extensions: 1616
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1613
Number of HSP's successfully gapped: 2
Length of query: 737
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 631
Effective length of database: 8,200,473
Effective search space: 5174498463
Effective search space used: 5174498463
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 115 (48.9 bits)