BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0141500 Os02g0141500|AK099428
         (228 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G35320.1  | chr5:13521893-13523144 FORWARD LENGTH=226           70   8e-13

>AT5G35320.1 | chr5:13521893-13523144 FORWARD LENGTH=226
          Length = 225

 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 110/252 (43%), Gaps = 67/252 (26%)

Query: 8   KRKELDQVVDGLSDFSLSGPAAKSRRLDIGLPPIMEEETPGPSMPFGHEMLGEEIHSVVS 67
           KRK++D+V D  SDFSLS PA K RRLD+ LPPIMEEE                    + 
Sbjct: 10  KRKDIDRVNDDFSDFSLSSPARKIRRLDVDLPPIMEEEE-------------------ID 50

Query: 68  MPIIEDMLGGAMESHPSSEDKALVLYKSVDNTACIGPGTSNPSIIISPDLIRSLKNQAFM 127
           +P ++D +   +E  P ++++A+VL+K +       P + N  + +   LI   KN+   
Sbjct: 51  LP-MQDTVAEEIELEPVNDERAIVLFKPLHYHQ---PSSGN--VFVDRHLISGFKNRFLR 104

Query: 128 QRNF---HGLEDKSPGCSNFLALVPWTPPQIATVSNWSASDSEKREFFEVPMESDETEVD 184
             +    +  ED+    +   A+V W P Q    S +S S       F+ P   + TE+D
Sbjct: 105 DVSIADDNQYEDER--LNKCQAVVCWNPSQ----STYSQSIGT----FQQPRTLEITELD 154

Query: 185 -----------SMDVEESPEANVAAI------------DGESLHQWQ--QHCMTPSSLPN 219
                      S ++EE   +   +              G  LH WQ  Q+CM P  LP 
Sbjct: 155 ETGEDVVMDDASNEIEEDTGSTSLSFPQQGQQQEQEHTYGFGLHPWQQAQNCMIP-QLPQ 213

Query: 220 PS---APVMWSR 228
            S    P+ W R
Sbjct: 214 VSTTPTPITWFR 225



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.130    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,830,716
Number of extensions: 258675
Number of successful extensions: 514
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 514
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 133
Effective length of database: 8,502,049
Effective search space: 1130772517
Effective search space used: 1130772517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 110 (47.0 bits)