BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0141000 Os02g0141000|AK121058
(153 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G24390.1 | chr2:10373796-10374654 FORWARD LENGTH=153 186 6e-48
AT4G31310.1 | chr4:15191325-15192337 FORWARD LENGTH=173 167 3e-42
AT3G28940.1 | chr3:10968324-10969311 REVERSE LENGTH=170 140 2e-34
AT3G28930.1 | chr3:10959890-10960728 REVERSE LENGTH=171 139 6e-34
AT5G39720.1 | chr5:15899673-15900517 FORWARD LENGTH=166 136 5e-33
AT3G28950.1 | chr3:10976359-10977370 REVERSE LENGTH=166 134 3e-32
AT5G39730.1 | chr5:15901740-15902624 FORWARD LENGTH=173 132 9e-32
>AT2G24390.1 | chr2:10373796-10374654 FORWARD LENGTH=153
Length = 152
Score = 186 bits (471), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 89/153 (58%), Positives = 113/153 (73%), Gaps = 3/153 (1%)
Query: 1 MAAAAASHRVFVYGTLMAEEVVRVLIGRSPSSSPAVLPNHQRFSIKGRVYPAILPVDGKE 60
M+ H VFVYG+LMA++VVR+L+ R P ++ A LP+ RFSIKGRVYPAI+P +
Sbjct: 1 MSGTVTMHSVFVYGSLMADDVVRLLLNRIPQTASATLPDFHRFSIKGRVYPAIIPAKSDK 60
Query: 61 VSGKVFKGITDRELNVLDIFEDEEYVKRTVEISLTDTS-EKLLAYAYIWGNQDDPDLYGE 119
VSGKV GITD ELNVLD FED EY + V++ LTD+S EKL Y+W +DDPDLYG
Sbjct: 61 VSGKVLFGITDDELNVLDEFEDVEYERENVQVLLTDSSDEKLQTKTYVWAKKDDPDLYGT 120
Query: 120 WDFEEWKRVHLEDYVKMTQEFMEELEQLEPKTE 152
WDFEEWK++H+E ++KMT+EF EEL PK+E
Sbjct: 121 WDFEEWKQLHMEGFLKMTKEFAEELNL--PKSE 151
>AT4G31310.1 | chr4:15191325-15192337 FORWARD LENGTH=173
Length = 172
Score = 167 bits (422), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/151 (54%), Positives = 104/151 (68%)
Query: 1 MAAAAASHRVFVYGTLMAEEVVRVLIGRSPSSSPAVLPNHQRFSIKGRVYPAILPVDGKE 60
M + A++ +FVYG+L EVV VL+ R P AVL RF +KGRVYP ILP +
Sbjct: 1 MLSGKAAYDLFVYGSLQEPEVVYVLLNRVPDHVSAVLSGFHRFRLKGRVYPTILPDGTGK 60
Query: 61 VSGKVFKGITDRELNVLDIFEDEEYVKRTVEISLTDTSEKLLAYAYIWGNQDDPDLYGEW 120
V+GKV KGITD EL +LD FED EY ++TVE+ LTDTSEKL Y+W N+DDPDLYGEW
Sbjct: 61 VNGKVLKGITDDELKMLDEFEDVEYDRKTVEVMLTDTSEKLQVETYVWKNKDDPDLYGEW 120
Query: 121 DFEEWKRVHLEDYVKMTQEFMEELEQLEPKT 151
DFEEW++ ED+V T++F+E E KT
Sbjct: 121 DFEEWRQHDKEDFVTATKKFLENRRLPEAKT 151
>AT3G28940.1 | chr3:10968324-10969311 REVERSE LENGTH=170
Length = 169
Score = 140 bits (354), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 94/138 (68%)
Query: 5 AASHRVFVYGTLMAEEVVRVLIGRSPSSSPAVLPNHQRFSIKGRVYPAILPVDGKEVSGK 64
+ SH VFVYG+ VV +++ SP PA L + + +KGR++ I P + ++GK
Sbjct: 7 SLSHDVFVYGSFQEPSVVNLILECSPVMVPAQLHGYHVYRLKGRLHACISPSENGLINGK 66
Query: 65 VFKGITDRELNVLDIFEDEEYVKRTVEISLTDTSEKLLAYAYIWGNQDDPDLYGEWDFEE 124
+ G+TD +L LD+ E EYV++TVE+ LTDTSEK Y+W N+DDP+LYGEWDFEE
Sbjct: 67 ILTGLTDSQLENLDMIEGSEYVRKTVEVVLTDTSEKKQVETYVWANKDDPNLYGEWDFEE 126
Query: 125 WKRVHLEDYVKMTQEFME 142
W+R+H++ +++ + +F+E
Sbjct: 127 WRRLHMDKFIEASTKFIE 144
>AT3G28930.1 | chr3:10959890-10960728 REVERSE LENGTH=171
Length = 170
Score = 139 bits (350), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 91/138 (65%)
Query: 5 AASHRVFVYGTLMAEEVVRVLIGRSPSSSPAVLPNHQRFSIKGRVYPAILPVDGKEVSGK 64
+ SH VFVYG+ VV +++ +P A L + + +KGR++P I P D ++GK
Sbjct: 7 SPSHDVFVYGSFQEPAVVNLILECAPVMVSAQLHGYHLYRLKGRLHPCISPSDNGLINGK 66
Query: 65 VFKGITDRELNVLDIFEDEEYVKRTVEISLTDTSEKLLAYAYIWGNQDDPDLYGEWDFEE 124
+ G+TD +L LD+ E EYV++TVE+ LTDT EK +W N+DDP++YGEWDFEE
Sbjct: 67 ILTGLTDSQLESLDMIEGTEYVRKTVEVVLTDTLEKKQVETIVWANKDDPNMYGEWDFEE 126
Query: 125 WKRVHLEDYVKMTQEFME 142
WKR+H+E +++ +FME
Sbjct: 127 WKRLHMEKFIEAATKFME 144
>AT5G39720.1 | chr5:15899673-15900517 FORWARD LENGTH=166
Length = 165
Score = 136 bits (342), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 87/135 (64%)
Query: 8 HRVFVYGTLMAEEVVRVLIGRSPSSSPAVLPNHQRFSIKGRVYPAILPVDGKEVSGKVFK 67
H VFVYG+ +V+ V++ R+P A LP QRF +KGR+YP I+P + EV GKV
Sbjct: 10 HNVFVYGSFQDPDVINVMLDRTPEIVSATLPGFQRFRLKGRLYPCIVPSEKGEVHGKVLM 69
Query: 68 GITDRELNVLDIFEDEEYVKRTVEISLTDTSEKLLAYAYIWGNQDDPDLYGEWDFEEWKR 127
G+T EL LD E EY + TV I D SEK+ Y+W N+ DPD++GEW+FEEWKR
Sbjct: 70 GVTSDELENLDAVEGNEYERVTVGIVREDNSEKMAVKTYMWINKADPDMFGEWNFEEWKR 129
Query: 128 VHLEDYVKMTQEFME 142
+H + +++ ++ ME
Sbjct: 130 LHKKKFIETFKKIME 144
>AT3G28950.1 | chr3:10976359-10977370 REVERSE LENGTH=166
Length = 165
Score = 134 bits (336), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 89/136 (65%)
Query: 7 SHRVFVYGTLMAEEVVRVLIGRSPSSSPAVLPNHQRFSIKGRVYPAILPVDGKEVSGKVF 66
SH VFVYG+++ V V++ R+ + PAVL + R+ +KG YP I+ D +V+GKV
Sbjct: 8 SHNVFVYGSILEPAVAAVILDRTADTVPAVLHGYHRYKLKGLPYPCIVSSDSGKVNGKVI 67
Query: 67 KGITDRELNVLDIFEDEEYVKRTVEISLTDTSEKLLAYAYIWGNQDDPDLYGEWDFEEWK 126
G++D ELN D+ E +Y + TVE+ D SEK+ Y+W N+DDP +YGEWDFEEW+
Sbjct: 68 TGVSDAELNNFDVIEGNDYERVTVEVVRMDNSEKVKVETYVWVNKDDPRMYGEWDFEEWR 127
Query: 127 RVHLEDYVKMTQEFME 142
VH E +V+ ++ +E
Sbjct: 128 VVHAEKFVETFRKMLE 143
>AT5G39730.1 | chr5:15901740-15902624 FORWARD LENGTH=173
Length = 172
Score = 132 bits (331), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 86/135 (63%)
Query: 8 HRVFVYGTLMAEEVVRVLIGRSPSSSPAVLPNHQRFSIKGRVYPAILPVDGKEVSGKVFK 67
H +FVYG+ +++ V++ R P A LP +RF +KGR+YP I+P + EV GKV
Sbjct: 10 HNIFVYGSFQEPDIIHVMLNRIPEIVSATLPGFKRFRLKGRLYPCIIPSENGEVHGKVLM 69
Query: 68 GITDRELNVLDIFEDEEYVKRTVEISLTDTSEKLLAYAYIWGNQDDPDLYGEWDFEEWKR 127
G+T+ EL +D E EY + VE+ D SEK+ Y W N++DPD+ GEWDFEEWKR
Sbjct: 70 GLTNDELENVDWVEGNEYERVFVEVVRKDNSEKMRVETYPWINKNDPDIGGEWDFEEWKR 129
Query: 128 VHLEDYVKMTQEFME 142
+H++ +++ E ME
Sbjct: 130 LHMKTFIEAFTEIME 144
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.134 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,526,209
Number of extensions: 149999
Number of successful extensions: 426
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 425
Number of HSP's successfully gapped: 7
Length of query: 153
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 63
Effective length of database: 8,639,129
Effective search space: 544265127
Effective search space used: 544265127
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 107 (45.8 bits)