BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0140300 Os02g0140300|J100056H05
         (193 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G43760.1  | chr2:18133276-18133872 FORWARD LENGTH=199          178   2e-45

>AT2G43760.1 | chr2:18133276-18133872 FORWARD LENGTH=199
          Length = 198

 Score =  178 bits (451), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/183 (48%), Positives = 117/183 (63%), Gaps = 3/183 (1%)

Query: 12  ATEEEDLVEILDEGSGRLDIARYVDHVRDLAAGAIATFEGTTRDSFEGRRVVELRYEAYG 71
           + EE++L+EIL+EG  ++D+ +Y+D+V    AGAIATF GTTRD FEG+ V+ELRYEAY 
Sbjct: 2   SAEEKNLIEILEEGH-KVDVVKYIDYVSAPQAGAIATFSGTTRDMFEGKTVLELRYEAYV 60

Query: 72  XXXXXXXXXXXXXXXXXHSLRRLAVAHRLGTVPAGEASVFVAASAVHRADAMEACRYVID 131
                              + ++AVAHRLG VP GE SV +A S+VHRAD ++AC+++ID
Sbjct: 61  PMATRCLSSICTTARSTWDIHKIAVAHRLGPVPVGETSVLIAVSSVHRADGLDACKFLID 120

Query: 132 EVKASVPIWKKEVYDDGEVWKENREFLXXXXXXXXX--XXXXXXXXXXXKGGGCCGRKVR 189
           E+KASVPIWKKEVY +GE+WKEN EF+                      +  GCCG KVR
Sbjct: 121 ELKASVPIWKKEVYTNGEIWKENSEFMEKRLELAEKRDSIVKKTVVEEHRRRGCCGSKVR 180

Query: 190 VNE 192
           V E
Sbjct: 181 VEE 183



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,317,836
Number of extensions: 105860
Number of successful extensions: 236
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 100
Effective length of database: 8,556,881
Effective search space: 855688100
Effective search space used: 855688100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)