BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0137800 Os02g0137800|AK060530
         (150 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G22942.1  | chr3:8134475-8135667 FORWARD LENGTH=101             60   6e-10
AT3G63420.1  | chr3:23417383-23418405 FORWARD LENGTH=99            53   8e-08

>AT3G22942.1 | chr3:8134475-8135667 FORWARD LENGTH=101
          Length = 100

 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 41/78 (52%)

Query: 54  GGAAMRSVGYVGKHRLSAAIARXXXXXXXXXXXXXXXXTMEPASAACQGVITSTEGKSDP 113
           G  + R V   GKHR+ A + R                 M+ ASA+C+  + S + K DP
Sbjct: 10  GQLSGRVVDTRGKHRIQAELKRLEQEARFLEEELEQLEKMDNASASCKEFLDSVDSKPDP 69

Query: 114 LLPVTIGPENASWERWFQ 131
           LLP T GP NA+W++WF+
Sbjct: 70  LLPETTGPVNATWDQWFE 87



>AT3G63420.1 | chr3:23417383-23418405 FORWARD LENGTH=99
          Length = 98

 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 33/67 (49%)

Query: 65  GKHRLSAAIARXXXXXXXXXXXXXXXXTMEPASAACQGVITSTEGKSDPLLPVTIGPENA 124
           GKHR+ A +AR                  +  S  C+ +++  E   DPLLP+T GP N 
Sbjct: 19  GKHRILAELARVEQEVAFLEKELKEVENTDIVSTVCEELLSVIEKGPDPLLPLTNGPLNL 78

Query: 125 SWERWFQ 131
            W+RWF+
Sbjct: 79  GWDRWFE 85



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.128    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,562,223
Number of extensions: 64705
Number of successful extensions: 104
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 2
Length of query: 150
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 60
Effective length of database: 8,639,129
Effective search space: 518347740
Effective search space used: 518347740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 107 (45.8 bits)