BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0137600 Os02g0137600|AK102168
         (436 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G10910.1  | chr5:3439588-3441517 FORWARD LENGTH=435            382   e-106

>AT5G10910.1 | chr5:3439588-3441517 FORWARD LENGTH=435
          Length = 434

 Score =  382 bits (980), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/377 (57%), Positives = 256/377 (67%), Gaps = 28/377 (7%)

Query: 70  KRRTRSGAAFDAGLYRRHSHAEHVPVMLGEVLAAFRRPLPLRSFVDCTLGAAGHSLAMME 129
           KRRTRS   ++         + HVPVMLGEVL  F   + LRSFVDCTLGAAGHS ++++
Sbjct: 74  KRRTRSSRGYELA-DGDEVPSSHVPVMLGEVLDIFSS-VRLRSFVDCTLGAAGHSSSIIQ 131

Query: 130 AHPEMELYIGMDVDPSALEIGRSRIEAFLANRETNGDDEDASQGTLRAYTHAKNFKYIKH 189
           +H E++ ++GMDVDP A ++G   I++ +               TL+A    KNFKYIK 
Sbjct: 132 SHSELKNFVGMDVDPVARKLGHFHIDSLM-------------HPTLKASIVLKNFKYIKS 178

Query: 190 VLGSVDENIAVGTSGVDGILIDLGMSSMQVNRSDRGFSVLQDGPLDMRMDPKATLKAEDI 249
           V+   D    +   GVDGIL+DLGMSSMQVN  +RGFSVLQ+GPLDMRMDP+ATL AEDI
Sbjct: 179 VIA--DTQPELLDVGVDGILMDLGMSSMQVNNPERGFSVLQEGPLDMRMDPQATLTAEDI 236

Query: 250 LNSWPDLEVGRILRDYGEESNWQSLQKRIVKARAMGGLHSTGELVKLIQRTCTSS-GGRQ 308
           +NSWP+ E+GR+LRDYGEESNW  LQ RIVKAR  GGLHSTGELV LI+ T  +S GGRQ
Sbjct: 237 VNSWPESELGRVLRDYGEESNWYLLQNRIVKARLNGGLHSTGELVDLIRGTSPASRGGRQ 296

Query: 309 GWIKTATRVFQALRIAVNDELRTLEDALHACFDCLATDGRLAVISFHSLEDRIVKQTF-- 366
           GWIKTATRVFQ LRIAVNDEL+TL+++L++ FD LA  GRLAVISFHSLEDR+VKQTF  
Sbjct: 297 GWIKTATRVFQGLRIAVNDELKTLQNSLYSSFDVLAPGGRLAVISFHSLEDRVVKQTFLD 356

Query: 367 --------XXXXXXXXXXXXXXXXXXXXXXSEDEPWFKQRVQGKNGTILTKRPISPSQEE 418
                                          E E W KQ V    G ILTKRPI+PS+EE
Sbjct: 357 ILGFQREEINGEGSSVKPERQIEERVEKELKEKEEWIKQTVIASKGVILTKRPITPSEEE 416

Query: 419 EELNQRCRSAKLRVIQK 435
           E LN+R RSAKLRVIQK
Sbjct: 417 ERLNRRARSAKLRVIQK 433



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,155,021
Number of extensions: 316773
Number of successful extensions: 832
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 827
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 334
Effective length of database: 8,310,137
Effective search space: 2775585758
Effective search space used: 2775585758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)