BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0137500 Os02g0137500|J065167P10
(92 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G79000.2 | chr1:29716639-29723984 REVERSE LENGTH=1742 142 5e-35
AT1G16710.1 | chr1:5714692-5721782 FORWARD LENGTH=1707 137 2e-33
AT3G12980.1 | chr3:4146919-4154495 FORWARD LENGTH=1671 89 5e-19
AT1G55970.1 | chr1:20932451-20938290 REVERSE LENGTH=1457 79 4e-16
AT1G67220.1 | chr1:25145587-25150450 FORWARD LENGTH=1368 70 3e-13
AT5G67480.2 | chr5:26931055-26932529 REVERSE LENGTH=384 61 1e-10
AT1G05690.1 | chr1:1707809-1709132 FORWARD LENGTH=365 52 4e-08
AT4G37610.1 | chr4:17670606-17671992 REVERSE LENGTH=369 50 2e-07
AT5G63160.1 | chr5:25333485-25335399 REVERSE LENGTH=366 48 1e-06
>AT1G79000.2 | chr1:29716639-29723984 REVERSE LENGTH=1742
Length = 1741
Score = 142 bits (357), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 64/75 (85%), Positives = 69/75 (92%)
Query: 3 LQLRKMLDLLVHASTCRSGSCQYPNCRKVKGLFRHGMQCKTRASGGCVLCKKMWYMLQLH 62
LQLRKMLDLLVHAS CRS CQYPNCRKVKGLFRHG+ CK RASGGCVLCKKMWY+LQLH
Sbjct: 1586 LQLRKMLDLLVHASQCRSAHCQYPNCRKVKGLFRHGINCKVRASGGCVLCKKMWYLLQLH 1645
Query: 63 ARACRDSGCNVPRCR 77
ARAC++S C+VPRCR
Sbjct: 1646 ARACKESECHVPRCR 1660
>AT1G16710.1 | chr1:5714692-5721782 FORWARD LENGTH=1707
Length = 1706
Score = 137 bits (344), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 68/74 (91%)
Query: 3 LQLRKMLDLLVHASTCRSGSCQYPNCRKVKGLFRHGMQCKTRASGGCVLCKKMWYMLQLH 62
LQLRKMLDLLVHAS CRS C YPNCRKVKGLFRHG++CK RASGGCVLCKKMWY+LQLH
Sbjct: 1595 LQLRKMLDLLVHASQCRSPVCLYPNCRKVKGLFRHGLRCKVRASGGCVLCKKMWYLLQLH 1654
Query: 63 ARACRDSGCNVPRC 76
ARAC++S C+VPRC
Sbjct: 1655 ARACKESECDVPRC 1668
>AT3G12980.1 | chr3:4146919-4154495 FORWARD LENGTH=1671
Length = 1670
Score = 89.0 bits (219), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 57/83 (68%), Gaps = 4/83 (4%)
Query: 3 LQLRKMLDLLVHASTCRSGSCQYPNCRKVKGLFRHGMQCKTRASGGCVLCKKMWYMLQLH 62
+Q ++ ++L+H TC + CQYP CR +KGL RHG+ CKTR GC+ CKKMW + +LH
Sbjct: 1561 IQNAQLREVLLHVMTCCTAQCQYPRCRVIKGLIRHGLVCKTR---GCIACKKMWSLFRLH 1617
Query: 63 ARACRDSGCNVPRCRCVGASHFC 85
+R CRD C VP+CR + A HF
Sbjct: 1618 SRNCRDPQCKVPKCRELRA-HFS 1639
>AT1G55970.1 | chr1:20932451-20938290 REVERSE LENGTH=1457
Length = 1456
Score = 79.0 bits (193), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 45/64 (70%), Gaps = 3/64 (4%)
Query: 13 VHASTCRSGSCQYPNCRKVKGLFRHGMQCKTRASGGCVLCKKMWYMLQLHARACRDSGCN 72
VHA+TCRS CQY CRK K LFRH + C T G C +CK +W +L+LHAR CRDS C
Sbjct: 1359 VHAATCRSTQCQYQGCRKSKMLFRHCIDCTT---GDCPICKGLWSLLKLHARNCRDSKCT 1415
Query: 73 VPRC 76
VP+C
Sbjct: 1416 VPKC 1419
>AT1G67220.1 | chr1:25145587-25150450 FORWARD LENGTH=1368
Length = 1367
Score = 69.7 bits (169), Expect = 3e-13, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query: 2 TLQLRKMLDLLVHASTCR---SGSCQYPNCRKVKGLFRHGMQCKTRASGG-CVLCKKMWY 57
T+ + ++L+ + HA C+ + SC YP C +VK LF H +QCK R G C C K+W
Sbjct: 1278 TVMVLEILNAISHALLCQHKTTKSCSYPKCHEVKALFTHNVQCKIRKKGTRCNTCYKLWQ 1337
Query: 58 MLQLHARACRDSGCNVPRCR 77
+++H C+D C VP+CR
Sbjct: 1338 TIRIHVYHCQDLNCPVPQCR 1357
>AT5G67480.2 | chr5:26931055-26932529 REVERSE LENGTH=384
Length = 383
Score = 60.8 bits (146), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 47/91 (51%), Gaps = 19/91 (20%)
Query: 4 QLRKMLDLLVHASTCRSG----------------SCQYPNCRKVKGLFRHGMQCKTRASG 47
QL + ++ LVH CR G +C Y C+ ++ L RH CK R G
Sbjct: 253 QLYEAMEALVH--ICRDGCKTIGPHDKDFKPNHATCNYEACKGLESLIRHFAGCKLRVPG 310
Query: 48 GCVLCKKMWYMLQLHARACRDSG-CNVPRCR 77
GCV CK+MW +L+LH+R C S C VP CR
Sbjct: 311 GCVHCKRMWQLLELHSRVCAGSDQCRVPLCR 341
>AT1G05690.1 | chr1:1707809-1709132 FORWARD LENGTH=365
Length = 364
Score = 52.4 bits (124), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 21/91 (23%)
Query: 3 LQLRKMLDLLVHASTCRSG----------------SCQYPNCRKVKGLFRHGMQCKTRAS 46
LQL + ++ LVH CR G C++P C+ ++G RH + CK+RAS
Sbjct: 235 LQLYEAMEALVH--ICREGCGTIGPRDKALKGSHTVCKFPACKGLEGALRHFLGCKSRAS 292
Query: 47 GGCVLCKKMWYMLQLHARACRDSG-CNVPRC 76
C CK+MW +LQLH+ C DS C V C
Sbjct: 293 --CSHCKRMWQLLQLHSCICDDSNSCKVSLC 321
>AT4G37610.1 | chr4:17670606-17671992 REVERSE LENGTH=369
Length = 368
Score = 50.1 bits (118), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 18/89 (20%)
Query: 4 QLRKMLDLLVHASTCRSG--------------SCQYPNCRKVKGLFRHGMQCKTRA-SGG 48
QL + ++ VH CR G SC + C ++ L +H CK R+ GG
Sbjct: 237 QLYEAMEAFVH--ICRDGCREIGPTKTETPHMSCGFQACNGLEQLLKHLAGCKLRSIPGG 294
Query: 49 CVLCKKMWYMLQLHARACRDSG-CNVPRC 76
C CK+MW +L+LH+R C DS C VP C
Sbjct: 295 CSRCKRMWQLLELHSRICVDSEQCKVPLC 323
>AT5G63160.1 | chr5:25333485-25335399 REVERSE LENGTH=366
Length = 365
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 12 LVHASTCRS--GSCQ-YPNCRKVKGLFRHGMQCKTRASG-GCVLCKKMWYMLQLHARACR 67
L + STC++ G C + C ++ L RH CK R G GCV CK+M +L+LH+ C
Sbjct: 234 LDNKSTCQAKPGPCSAFSTCYGLQLLIRHFAVCKKRVDGKGCVRCKRMIQLLRLHSSICD 293
Query: 68 DS-GCNVPRCR 77
S C VP CR
Sbjct: 294 QSESCRVPLCR 304
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.332 0.138 0.493
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,131,839
Number of extensions: 75737
Number of successful extensions: 280
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 9
Length of query: 92
Length of database: 11,106,569
Length adjustment: 63
Effective length of query: 29
Effective length of database: 9,379,361
Effective search space: 272001469
Effective search space used: 272001469
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 104 (44.7 bits)