BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0135600 Os02g0135600|AK069843
         (337 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11810.1  | chr5:3808739-3810440 FORWARD LENGTH=307            187   5e-48

>AT5G11810.1 | chr5:3808739-3810440 FORWARD LENGTH=307
          Length = 306

 Score =  187 bits (476), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 122/341 (35%), Positives = 174/341 (51%), Gaps = 39/341 (11%)

Query: 1   MADKPSRGLVLYXXXXXXXXXXXXXXXXXXXXXXXXXXLDAFASLASCGFLSLRSPPLAS 60
           MADK SR L+LY                          + + AS+A+CGFLSL   P A 
Sbjct: 1   MADKSSRSLILYGDGLARFVDPSNTN------------IHSLASVATCGFLSL---PNAP 45

Query: 61  GEEKRDSTILELAQLLDV---YDDLFPAKTEKTGQETAQVDPLQLAVPKLSERFMGIRAA 117
            E + +  + E + LLD    Y      K +  G +          +  L+ERFMG++AA
Sbjct: 46  PETENERIVREFSHLLDASEAYSIASGLKPKGNGND----------ISTLAERFMGLKAA 95

Query: 118 MVTNCPLVSSFAANLGFHVSGTEDLVAQSGSSAASKEAGIISQALSLLGFSEGNVQETSE 177
           +VT+   ++SF   +G  V    ++  +S S  +   +   S+ L LLGF  G   + + 
Sbjct: 96  LVTDSSTLTSFGKLIGLDVLQLSEICQESDSFPSDATS---SKLLKLLGFEGGKCLDVNL 152

Query: 178 FDLVFLHVAMENTNSKLGKLGMKTDLNRLDKLVGXXXXXXXXXXXXXXRILVSVMLSYGS 237
           +DLVF+H  ++  N+         ++  LD L+G              R+ +SV+LSYGS
Sbjct: 153 YDLVFVHFGVDEYNNG-------NNMGILDSLIGSIMGMAQPGSEILSRLHLSVVLSYGS 205

Query: 238 AAE-NKDEFSISKSSTEIDSDLNLLRPRQSYTMKAGNTLDDVRNHHPILLAQWQEGVTRS 296
             + +   F I     +I+     L PRQSYTM+   T DDVR++ P+L+AQWQ GVTR 
Sbjct: 206 VTDKDVSVFPIKTPQEDINPAFIGLVPRQSYTMRGEKTRDDVRHYCPMLVAQWQHGVTRK 265

Query: 297 DLTEGFSFEEFIKRGGNLAMLAERFLHEVAFKLWKAPKYGA 337
           DL +  SFE   K  GNL + A+RF+HEVAFKLWKAPKYGA
Sbjct: 266 DLVDTLSFEALKKLCGNLVIPADRFIHEVAFKLWKAPKYGA 306



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.132    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,827,422
Number of extensions: 203732
Number of successful extensions: 540
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 534
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 238
Effective length of database: 8,392,385
Effective search space: 1997387630
Effective search space used: 1997387630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)