BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0134200 Os02g0134200|AK108331
         (255 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G70420.1  | chr1:26539840-26540658 REVERSE LENGTH=273           51   5e-07

>AT1G70420.1 | chr1:26539840-26540658 REVERSE LENGTH=273
          Length = 272

 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 58/135 (42%), Gaps = 30/135 (22%)

Query: 45  DAEGAGLDLDFAFAPPVSAAELAPADDIFAHGRIVPAYPVFDRSLLDLSPGDASTAAP-- 102
           D +  G + DF+FA   +      AD+ F  G+I P YP+F+R++    P + +  +P  
Sbjct: 56  DKDDEGREEDFSFASVNADNSPITADEAFEDGQIRPVYPLFNRNIFFDDPEEKTLRSPLK 115

Query: 103 --------------SADT---YCAWTPRSAP-GSPGRDRFPKXXXXXXXXXXXXRRWRLR 144
                          +DT   YC+WT R+    SP   R               + WR R
Sbjct: 116 KLFVESTTTEEEEEESDTVGPYCSWTNRTVEQASPETCR-------KSNSTGFSKLWRFR 168

Query: 145 DLVGAGGRSRSDGKD 159
           DLV    RS SDGKD
Sbjct: 169 DLV---LRSNSDGKD 180



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.133    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,699,752
Number of extensions: 166179
Number of successful extensions: 312
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 312
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 159
Effective length of database: 8,474,633
Effective search space: 1347466647
Effective search space used: 1347466647
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)