BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0130600 Os02g0130600|AK120974
(362 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G62960.1 | chr5:25269444-25271533 FORWARD LENGTH=348 312 2e-85
AT1G10660.2 | chr1:3533009-3534781 FORWARD LENGTH=321 254 5e-68
AT3G27770.1 | chr3:10285818-10287474 REVERSE LENGTH=316 219 2e-57
AT2G47115.1 | chr2:19345376-19346864 REVERSE LENGTH=301 184 5e-47
AT1G70505.1 | chr1:26570647-26572463 FORWARD LENGTH=359 179 2e-45
>AT5G62960.1 | chr5:25269444-25271533 FORWARD LENGTH=348
Length = 347
Score = 312 bits (800), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 156/328 (47%), Positives = 201/328 (61%), Gaps = 7/328 (2%)
Query: 29 SWEPTVTADTSDLHYWMQWRXXXXXXXXXXXXXXXXXXXWRHXXXXXXXXXXXXXXXXXX 88
+W P+ TA+T++ YW WR +++
Sbjct: 20 AWHPSTTANTTESSYWFNWRVMICCIWMAIATVITAFLIFKYEGFRRKRSDVGEVDGGEK 79
Query: 89 XXXXXXXXVLYDDEAWRPCLRDIHPAWLLGYRXXXXXXXXXXXXXXXXXDGGTIFYYYTQ 148
+Y+DE WRPCLR+IHPAWLL +R DG TIF+YYTQ
Sbjct: 80 EWSGN----VYEDETWRPCLRNIHPAWLLAFRVVAFFVLLVMLIVIGLVDGPTIFFYYTQ 135
Query: 149 WTFILVTIYFGLGTALSIYGCSKLADENVVTERTDM--ELGSYVAHGAGTKPNLNGEDDT 206
WTF L+T+YFGLG+ LS++GC + ++ +R D + S A G + +
Sbjct: 136 WTFGLITLYFGLGSLLSLHGCYQY-NKRAAGDRVDSIEAIDSERARSKGADNTIQQSQYS 194
Query: 207 GEIAGFWGYLLQIIYQTNAGAVMLTDCVFWFIIFPFLTVKDYNLNFLLIGMHSVNAVFLL 266
AGFWGY+ QII+Q NAGAV+LTDCVFWFII PFL + DY+LN L+I MHS+NA+FLL
Sbjct: 195 SNPAGFWGYVFQIIFQMNAGAVLLTDCVFWFIIVPFLEIHDYSLNVLVINMHSLNAIFLL 254
Query: 267 GEAALNSLSFPWFRVAYFFLWTALYVIFQWILHASTPLWWPYPFLDVSANLSPLWYFAVA 326
G+AALNSLSFP FR+AYFF WT YVIFQW LH+ +WWPYPFLD+S++ +PLWYF+VA
Sbjct: 255 GDAALNSLSFPCFRIAYFFFWTIAYVIFQWALHSLVHIWWPYPFLDLSSHYAPLWYFSVA 314
Query: 327 IMQLPCYAVFRLVIKLKHHLLTRWFPGS 354
+M LPCY F L++KLKH LL RWFP S
Sbjct: 315 VMHLPCYGAFALLVKLKHRLLQRWFPES 342
>AT1G10660.2 | chr1:3533009-3534781 FORWARD LENGTH=321
Length = 320
Score = 254 bits (649), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 141/328 (42%), Positives = 182/328 (55%), Gaps = 24/328 (7%)
Query: 34 VTADTSDLHYWMQWRXXXXXXXXXXXXXXXXXXXWRHXXXXXXXXXXXXXXXXXXXXXXX 93
+ ADT+ YW+ WR W++
Sbjct: 1 MAADTTASSYWLNWRVLLCALILLAPIVLAAVLIWKYEGKRRRQRESQRELPG------- 53
Query: 94 XXXVLYDDEAWRPCLRDIHPAWLLGYRXXXXXXXXXXXXXXXXXDGGTIFYYYTQWTFIL 153
L+ DEAW C + IHP WLL +R DG IFY+YTQWTF L
Sbjct: 54 ---TLFQDEAWTTCFKRIHPLWLLAFRVFSFVAMLTLLISNVVRDGAGIFYFYTQWTFTL 110
Query: 154 VTIYFGLGTALSIYGC---SKLADENV--VTERTDMELGSY----VAHGAGT---KPNLN 201
VT+YFG + LS+YGC +K A N+ T D E G+Y G G N
Sbjct: 111 VTLYFGYASVLSVYGCCIYNKEASGNMESYTSIGDTEQGTYRPPIALDGEGNTSKASNRP 170
Query: 202 GEDDTGEIAGFWGYLLQIIYQTNAGAVMLTDCVFWFIIFPFLTVKDYNLNFLLIGMHSVN 261
E + AGFW Y+ QI++QT AGAV+LTD VFW II+PF K Y L+FL + MHS+N
Sbjct: 171 SEAPARKTAGFWVYIFQILFQTCAGAVVLTDIVFWAIIYPF--TKGYKLSFLDVCMHSLN 228
Query: 262 AVFLLGEAALNSLSFPWFRVAYFFLWTALYVIFQWILHASTPLWWPYPFLDVSANLSPLW 321
AVFLLG+ +LNSL FP FR+AYF LW+ ++V +QWI+HA LWWPY FLD+S+ +PLW
Sbjct: 229 AVFLLGDTSLNSLRFPLFRIAYFVLWSCIFVAYQWIIHAVKNLWWPYQFLDLSSPYAPLW 288
Query: 322 YFAVAIMQLPCYAVFRLVIKLKHHLLTR 349
Y VA+M +PC+AVF LVIKLK++LL +
Sbjct: 289 YLGVAVMHIPCFAVFALVIKLKNYLLQQ 316
>AT3G27770.1 | chr3:10285818-10287474 REVERSE LENGTH=316
Length = 315
Score = 219 bits (558), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 107/264 (40%), Positives = 159/264 (60%), Gaps = 17/264 (6%)
Query: 97 VLYDDEAWRPCLRDIHPAWLLGYRXXXXXXXXXXXXXXXXXDGGTIFYYYTQWTFILVTI 156
VL D+ WRPC IHP WLLG+R G I+YYYTQWTF L+ I
Sbjct: 57 VLCIDDVWRPCFERIHPGWLLGFRVLGFCFLLANNIARFANRGWRIYYYYTQWTFTLIAI 116
Query: 157 YFGLGTALSIYGC---SKLADENVVTERTDMELGSYVAHGAGTKPNLNGED--------- 204
YFG+G+ LSIYGC K + ++ ++ ++ A P ++G++
Sbjct: 117 YFGMGSLLSIYGCLQYKKQGNTGLIADQVGID-----AENGFRSPLIDGDNMVSFEKRKT 171
Query: 205 DTGEIAGFWGYLLQIIYQTNAGAVMLTDCVFWFIIFPFLTVKDYNLNFLLIGMHSVNAVF 264
E + +L QIIYQ AGA +LTD ++W +IFPFL+++DY ++F+ + +H+ N V
Sbjct: 172 SGSEALKSYVHLFQIIYQMGAGAAVLTDSIYWTVIFPFLSLQDYEMSFMTVNLHTSNLVL 231
Query: 265 LLGEAALNSLSFPWFRVAYFFLWTALYVIFQWILHASTPLWWPYPFLDVSANLSPLWYFA 324
LL + LN L FP FR +YF LWT +V+FQWILH + WPYPFL++S +++P+WY
Sbjct: 232 LLIDTFLNRLKFPLFRFSYFILWTGCFVLFQWILHMFISVGWPYPFLNLSLDMAPVWYLL 291
Query: 325 VAIMQLPCYAVFRLVIKLKHHLLT 348
VA++ LP Y +F L++K+K+ L++
Sbjct: 292 VALLHLPSYGLFALIVKIKYKLIS 315
>AT2G47115.1 | chr2:19345376-19346864 REVERSE LENGTH=301
Length = 300
Score = 184 bits (468), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 107/260 (41%), Positives = 142/260 (54%), Gaps = 27/260 (10%)
Query: 104 WRPCLRDIHPAWLLGYRXXXXXXXXXXXXXXXXXDGGTIFYYYTQWTFILVTIYFGLGTA 163
W C +HP WLL R +IF YYT+WTF+LV IYF +G
Sbjct: 60 WASCWTRLHPGWLLFTRSTSFLSMAALLAWDVIKWDASIFVYYTEWTFMLVIIYFAMGIV 119
Query: 164 LSIYGC-------SKLADENVVTERTDMELGSYVAHGAGTKPNLNGEDDTGEIAGFWGYL 216
S+YGC + DE+VV E+ E + E+ G
Sbjct: 120 ASVYGCLIHLKELTLETDEDVVVEKVGDEFRRRL-----------------EVCG---CF 159
Query: 217 LQIIYQTNAGAVMLTDCVFWFIIFPFLTVKDYNLNFLLIGMHSVNAVFLLGEAALNSLSF 276
+Q I+QT+AGAV+LTD VFW +I PFL+ + LN L I MH+ NA FLL E LNSL F
Sbjct: 160 MQTIFQTSAGAVVLTDIVFWLVIVPFLSTTRFGLNTLTICMHTANAGFLLLETLLNSLPF 219
Query: 277 PWFRVAYFFLWTALYVIFQWILHASTPLWWPYPFLDVSANLSPLWYFAVAIMQLPCYAVF 336
PWFR+ YF LW+ LYVIFQWI+HA WWPYPFL++ +P+WY +AI+ +PCY +
Sbjct: 220 PWFRMGYFVLWSCLYVIFQWIIHACGFTWWPYPFLELDKPWAPIWYLCMAIVHIPCYGAY 279
Query: 337 RLVIKLKHHLLTRWFPGSVV 356
++K K+ FP ++V
Sbjct: 280 AAIVKAKNSCFPYLFPNALV 299
>AT1G70505.1 | chr1:26570647-26572463 FORWARD LENGTH=359
Length = 358
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 137/261 (52%), Gaps = 12/261 (4%)
Query: 24 GSSTRSWEPTVTADTSDLHYWMQWRXXXXXXXXXXXXXXXXXXXWRHXXXXXXXXXXXXX 83
GS+ +W+PT+T++T+ YW+ WR WR+
Sbjct: 17 GSTEHTWQPTMTSETNIPSYWLNWRFFVCAIFVLTSLFLSSYLIWRYEGPIKRKKRGDDQ 76
Query: 84 XXXXXXXXXXXXXVLYDDEAWRPCLRDIHPAWLLGYRXXXXXXXXXXXXXXXXXDGGTIF 143
V+YDDE+W +++IHP WLLG+R DG IF
Sbjct: 77 SLELEQLTG----VVYDDESWNTSVKEIHPNWLLGFRVFGFVVLLGLISGNAIADGTGIF 132
Query: 144 YYYTQWTFILVTIYFGLGTALSIYGCSKLADENVVTERTDMELGSYVAHGAGTKPNL--- 200
+YTQWTF LVTIYFGLG+ +SIY + D E G+Y G N+
Sbjct: 133 IFYTQWTFTLVTIYFGLGSLVSIYRFRSPDNGENRVSIVDEEQGTYRPPGNAENSNVFKS 192
Query: 201 -NGED----DTGEIAGFWGYLLQIIYQTNAGAVMLTDCVFWFIIFPFLTVKDYNLNFLLI 255
+G D T ++A GY+ QI++QT AGAV+LTD VFWFII+PFLT KD+NL+F ++
Sbjct: 193 SSGHDRENMSTRQVATTLGYIHQILFQTCAGAVLLTDGVFWFIIYPFLTAKDFNLDFFIV 252
Query: 256 GMHSVNAVFLLGEAALNSLSF 276
MHSVNA+FLLGE LNSL F
Sbjct: 253 IMHSVNAIFLLGETFLNSLGF 273
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.141 0.495
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,685,031
Number of extensions: 240796
Number of successful extensions: 548
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 536
Number of HSP's successfully gapped: 5
Length of query: 362
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 262
Effective length of database: 8,364,969
Effective search space: 2191621878
Effective search space used: 2191621878
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 112 (47.8 bits)