BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0129900 Os02g0129900|Os02g0129900
         (300 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G17670.1  | chr5:5821082-5822600 FORWARD LENGTH=310            328   3e-90

>AT5G17670.1 | chr5:5821082-5822600 FORWARD LENGTH=310
          Length = 309

 Score =  328 bits (840), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 164/243 (67%), Positives = 185/243 (76%), Gaps = 7/243 (2%)

Query: 59  DWLRNAAGLVDPSYWRCNLRPRPVLDWYLKRVDEAVSEARELSPNEGISLIGHSAGGWLA 118
           DW RNAAGLVDP+YWR  LRPRPVLDWYL R+D+AV EA EL+  +G+ LIGHSAGGWLA
Sbjct: 71  DWFRNAAGLVDPAYWRGTLRPRPVLDWYLNRIDDAVREANELAQGQGLCLIGHSAGGWLA 130

Query: 119 RVYMEEFDASDISXXXXXXXXXXXXXXXXXXVIDQTRGLLTYVEKNCAPAVYTPELKYVC 178
           RVYMEE+  SDIS                  VIDQTRGLL YVE+NCA AVYTPELKYVC
Sbjct: 131 RVYMEEYGNSDISLLLTLGTPHLPPPRGLPGVIDQTRGLLYYVEENCAKAVYTPELKYVC 190

Query: 179 IAGRYIQGAPLTGNTIATTDD--ILAVDTPSDIAEAVMVSTNDKSTQSGPTLRARFIGQG 236
           IAGRYI+GA L  N  A  D    + +D+   I+E + +++N KS     T RARF+GQG
Sbjct: 191 IAGRYIRGARLVDNADADIDSDVTVGIDSGEGISE-LAIASNKKSG----TFRARFVGQG 245

Query: 237 YKQVCGRADVWGDGVVPEVSAHLEGALNISFDGVYHSPVGSDDEQRPWYGSPAILKQWVH 296
           YKQVCGRADVWGDGVVPEVSAHLEGALN+SFDGVYHSPVGSDDE RPWYGSP I+K W+H
Sbjct: 246 YKQVCGRADVWGDGVVPEVSAHLEGALNVSFDGVYHSPVGSDDETRPWYGSPVIVKDWIH 305

Query: 297 HLL 299
           HLL
Sbjct: 306 HLL 308



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.135    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,403,119
Number of extensions: 205915
Number of successful extensions: 440
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 438
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 202
Effective length of database: 8,419,801
Effective search space: 1700799802
Effective search space used: 1700799802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)