BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0128300 Os02g0128300|AK101453
         (446 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G45610.1  | chr5:18496397-18499673 REVERSE LENGTH=647           67   1e-11

>AT5G45610.1 | chr5:18496397-18499673 REVERSE LENGTH=647
          Length = 646

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 136/339 (40%), Gaps = 82/339 (24%)

Query: 104 FSPPRELSQRPAAEVSSREIVAVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVERLK 163
           +SPPRELSQR  +  +   +   +S                              ++RLK
Sbjct: 80  YSPPRELSQRVVSGFNDALMDYSNSTVVTAAKPISPTTSNRRCDSEKDLE-----IDRLK 134

Query: 164 RELNRVSKQMNDVKNECSELKKDRTRKDLEIKAKEAEIQSL-RRANVGSANKYAGSMAMD 222
           +EL RVSKQ+ DV+ ECS+LKK         K+KE E ++L    N G  +    S  +D
Sbjct: 135 KELERVSKQLLDVEQECSQLKKG--------KSKETESRNLCADDNRGQCSTVHASKRID 186

Query: 223 IDQSVHAPANGALHTGDSCLASTRRAETLNGRNKELSSPQDGLCLNQRNQTYASEVLEES 282
           ++  V                      ++N R  +       + L+ +            
Sbjct: 187 LEPDVAT-------------------SSVNHREND-----SRMALDDK------------ 210

Query: 283 VRFESKGSKHKEIKTVGVQTDLPGNNEYLEHKKVLVDRISSNLCAVWGMPTNSLMGRSLI 342
                     +  KT GVQ D+  +++           +S  L  +W         ++LI
Sbjct: 211 ----------RSFKTTGVQADVANHSD-----------LSKKLLDIWRTSNYQDPRKNLI 249

Query: 343 SKILVSCSEEILTLVQSTG------SLDKCEASSEASSSVRNA-----ISQVYDIIIKTS 391
           S++L++CS ++  L            L+K EA + +      A     + Q+Y  + K S
Sbjct: 250 SELLLACSTDLQILFSFMKISTPPQELNKQEAKTSSDRQSSKALESEKVYQLYSAVTKIS 309

Query: 392 SDTIPIQTLLEALLNLAAVGNDAVVSRALRMLHSVLQHL 430
              + ++TL+E LL+L       +V R+LR+LH +L+H+
Sbjct: 310 YGFVNLKTLVEPLLDLCKAETAVLVHRSLRVLHVLLEHI 348



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.128    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,528,071
Number of extensions: 268931
Number of successful extensions: 834
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 833
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 344
Effective length of database: 8,310,137
Effective search space: 2858687128
Effective search space used: 2858687128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 113 (48.1 bits)