BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0128100 Os02g0128100|Os02g0128100
         (176 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17960.1  | chr4:9971154-9972227 FORWARD LENGTH=155             70   7e-13
AT5G46620.1  | chr5:18917850-18919128 REVERSE LENGTH=150           55   2e-08

>AT4G17960.1 | chr4:9971154-9972227 FORWARD LENGTH=155
          Length = 154

 Score = 69.7 bits (169), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 69/166 (41%), Gaps = 21/166 (12%)

Query: 1   MGFFRRIAGMFGISRXXXXXXXXXXXXXXXXXXXXXXXEVPQDKVVXXXXXXXXXGNVQR 60
           MGFF+++AG+FG  +                       E                  + R
Sbjct: 1   MGFFKKLAGVFGFGQEVLKNEEDDIDVYGDGGNQQRFRET----------------GLPR 44

Query: 61  RGFSXXXXXXXXXXXXXXXXXXCPQGDGGVQGFRWYTRKLRIDEDGDVADEFLDEVVPEI 120
           +GF                   C  GDGG+QG RWYT++LR+DEDGDVADEFL+E     
Sbjct: 45  KGFGVPVQVAVERSQLGPLLQPCANGDGGIQGLRWYTKRLRVDEDGDVADEFLEEGEKST 104

Query: 121 SINNDST---PAGRYQVKYNTKSAALAMRKQISVIDGVNKLLLEQQ 163
           +  +D        R+Q+K  TK   + +R  +   DG  +  +E Q
Sbjct: 105 NAEDDHNCIKTMPRFQIKRKTK--PVKVRGLVVSSDGKLQQCIEHQ 148



>AT5G46620.1 | chr5:18917850-18919128 REVERSE LENGTH=150
          Length = 149

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/33 (69%), Positives = 28/33 (84%)

Query: 83  CPQGDGGVQGFRWYTRKLRIDEDGDVADEFLDE 115
           C   DGGVQG RWY+ +L+IDEDGDVADEFL++
Sbjct: 84  CAALDGGVQGLRWYSMRLKIDEDGDVADEFLED 116



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.139    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,671,898
Number of extensions: 84713
Number of successful extensions: 211
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 2
Length of query: 176
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 84
Effective length of database: 8,584,297
Effective search space: 721080948
Effective search space used: 721080948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)