BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0125300 Os02g0125300|AK101060
         (249 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G47120.1  | chr5:19136071-19137585 FORWARD LENGTH=248          286   8e-78
AT4G17580.1  | chr4:9789789-9791145 REVERSE LENGTH=248            198   2e-51
AT5G47130.1  | chr5:19141016-19142011 FORWARD LENGTH=188          134   7e-32

>AT5G47120.1 | chr5:19136071-19137585 FORWARD LENGTH=248
          Length = 247

 Score =  286 bits (731), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 141/216 (65%), Positives = 166/216 (76%)

Query: 23  LKNFRQISPAVQSHLKLVYLTLCVALAASAVGAYLHVALNIGGMLTMLGCVGSIAWLFSV 82
           LKNFRQISPAVQ+HLK VYLTLC AL ASA GAYLHV  NIGG+LT +GC+G++ WL S 
Sbjct: 22  LKNFRQISPAVQNHLKRVYLTLCCALVASAFGAYLHVLWNIGGILTTIGCIGTMIWLLSC 81

Query: 83  PVFEERKRFGIXXXXXXXEGASVGPLIKLAVDFDSSILVTAFVGTAIAFGCFTCAAIVAK 142
           P +E +KR  +       EGASVGPLIK+A+D D SIL+TAFVGTAIAF CF+ AA++A+
Sbjct: 82  PPYEHQKRLSLLFVSAVLEGASVGPLIKVAIDVDPSILITAFVGTAIAFVCFSAAAMLAR 141

Query: 143 RREYXXXXXXXXXXXXXXXXXQFAASIFGHSTGSFMFEVYFGLLIFLGYMVYDTQEIIER 202
           RREY                 QFA+SIFG S   F FE+YFGLLIF+GYMV DTQEIIE+
Sbjct: 142 RREYLYLGGLLSSGLSMLMWLQFASSIFGGSASIFKFELYFGLLIFVGYMVVDTQEIIEK 201

Query: 203 AHHGDMDYIKHALTLFTDFVAVLVRILVIMLKNASD 238
           AH GDMDY+KH+LTLFTDFVAV VRIL+IMLKN++D
Sbjct: 202 AHLGDMDYVKHSLTLFTDFVAVFVRILIIMLKNSAD 237



>AT4G17580.1 | chr4:9789789-9791145 REVERSE LENGTH=248
          Length = 247

 Score =  198 bits (504), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 110/223 (49%), Positives = 143/223 (64%), Gaps = 17/223 (7%)

Query: 23  LKNFRQISPAVQSHLKL-------------VYLTLCVALAASAVGAYLHVALNIGGMLTM 69
           L+N  + SPAVQ+HLK              +YLTL  AL ASA+GAY+H+  NIGG ++ 
Sbjct: 13  LRNSHEFSPAVQNHLKRFCIVLGSHRCVIDLYLTLFFALLASAIGAYIHMVWNIGGNVST 72

Query: 70  LGCVGSIAWL-FSVPVFEERKRFGIXXXXXXXEGASVGPLIKLAVDFDSSILVTAFVGTA 128
           LG  G + WL F++    E     +       +GASVGP+I L +DFDSS+LVTAFVGTA
Sbjct: 73  LGFSGIMIWLRFTL---YEPNMLYLLFLFALLKGASVGPMIMLVIDFDSSVLVTAFVGTA 129

Query: 129 IAFGCFTCAAIVAKRREYXXXXXXXXXXXXXXXXXQFAASIFGHSTGSFMFEVYFGLLIF 188
           +AF CF+ AA++A RREY                 Q A+SIFG ST    FE+YFGLLIF
Sbjct: 130 VAFVCFSAAAMLATRREYLYHGASLACCMSILWWVQIASSIFGGSTTVVKFELYFGLLIF 189

Query: 189 LGYMVYDTQEIIERAHHGDMDYIKHALTLFTDFVAVLVRILVI 231
           +GY+V DTQ I E+AHHGDMDY++H+ T FTDF ++ V+ILV+
Sbjct: 190 VGYIVVDTQMITEKAHHGDMDYVQHSFTFFTDFASLFVQILVL 232



>AT5G47130.1 | chr5:19141016-19142011 FORWARD LENGTH=188
          Length = 187

 Score =  134 bits (336), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 77/183 (42%), Positives = 108/183 (59%), Gaps = 12/183 (6%)

Query: 61  LNIGGMLTMLGCVGSI-AWLFSVPVFEERKRFGIXXXXXXXEGASVGPLIKLAVDFDSSI 119
           LNIGG +T LG V S+   + S P ++ + RF +        GASVGP IK  +D DSSI
Sbjct: 3   LNIGGTITKLGWVLSLLEHVVSCPPYKHKIRFSLLLLFGVLHGASVGPCIKSTIDIDSSI 62

Query: 120 LVTAFVGTAIAFGCFTCAAIVAKRREYX----XXXXXXXXXXXXXXXXQFAASIFGHSTG 175
           L+TAF+GTA+ F CF+  A++A+RREY                     QFA++       
Sbjct: 63  LITAFLGTAVIFFCFSAVAMLARRREYIYLGGLLSSGFSLLTWLKNSDQFASA------- 115

Query: 176 SFMFEVYFGLLIFLGYMVYDTQEIIERAHHGDMDYIKHALTLFTDFVAVLVRILVIMLKN 235
           +   ++Y GLL+F+G +V +TQEIIE+AH GDMDY  H+L L+  FV V ++IL IM   
Sbjct: 116 TVEIQMYLGLLLFVGCIVVNTQEIIEKAHCGDMDYAVHSLILYIGFVRVFLQILSIMWNT 175

Query: 236 ASD 238
           ++D
Sbjct: 176 SAD 178



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.331    0.142    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,612,536
Number of extensions: 114920
Number of successful extensions: 306
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 3
Length of query: 249
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 153
Effective length of database: 8,474,633
Effective search space: 1296618849
Effective search space used: 1296618849
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 110 (47.0 bits)