BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0123200 Os02g0123200|AK065876
         (246 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G45690.1  | chr2:18823465-18825601 REVERSE LENGTH=368          207   3e-54

>AT2G45690.1 | chr2:18823465-18825601 REVERSE LENGTH=368
          Length = 367

 Score =  207 bits (528), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 108/251 (43%), Positives = 165/251 (65%), Gaps = 19/251 (7%)

Query: 1   MLLQGGEVANEEEINILDENFGAKSNGVPVIYPMNGHFQNGHGVASNGLDGKAGFVSKSL 60
           MLLQGGE  NEE+ +   E+     N             +G  +  +GL  +      +L
Sbjct: 131 MLLQGGETPNEEKDSNQSESQNRAGN-------------SGRNLGPHGLGNQNHHNPWNL 177

Query: 61  EGRAVAALNKFGQNAKMT--SDPMWMKKALPPP---DPPAMVVEKPTLASIWSAKGISGR 115
           EGRA++AL+ FGQNA+ T  S P W ++        +PP +   + T++ + + KG++G 
Sbjct: 178 EGRAMSALSSFGQNARTTTSSTPGWSRRIQHQQAVIEPPMIKERRRTMSELLTEKGVNGA 237

Query: 116 LFLLGEVVHIFRPLLYVLLIKKFGIKSWTPWLVSLAVEITSLGIHSRATDLHQRGGKVHQ 175
           LF +GEV++I RPL+YVL I+K+G++SW PW +SL+V+   +G+ + +    ++  +VH 
Sbjct: 238 LFAIGEVLYITRPLIYVLFIRKYGVRSWIPWAISLSVDTLGMGLLANSKWWGEKSKQVH- 296

Query: 176 LSSAERDELKRRKMMWALYVMRDPFFTRYTKRHLQKAEKVLDPVPLIGFLTGKLVELVEG 235
            S  E+DEL+RRK++WALY+MRDPFFT+YT++ L+ ++K L+ +PLIGFLT K+VEL+EG
Sbjct: 297 FSGPEKDELRRRKLIWALYLMRDPFFTKYTRQKLESSQKKLELIPLIGFLTEKIVELLEG 356

Query: 236 AQTRYTYTSGS 246
           AQ+RYTY SGS
Sbjct: 357 AQSRYTYISGS 367



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,747,465
Number of extensions: 238850
Number of successful extensions: 679
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 676
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 150
Effective length of database: 8,474,633
Effective search space: 1271194950
Effective search space used: 1271194950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)