BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0119400 Os02g0119400|AK102774
(232 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G79590.1 | chr1:29947064-29948304 FORWARD LENGTH=234 308 1e-84
AT1G16240.1 | chr1:5555183-5556340 REVERSE LENGTH=233 301 1e-82
AT1G16230.1 | chr1:5553467-5554324 REVERSE LENGTH=194 180 5e-46
AT1G16225.1 | chr1:5551041-5552028 REVERSE LENGTH=200 136 7e-33
AT1G28490.1 | chr1:10016433-10017842 FORWARD LENGTH=246 63 1e-10
>AT1G79590.1 | chr1:29947064-29948304 FORWARD LENGTH=234
Length = 233
Score = 308 bits (790), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 145/233 (62%), Positives = 195/233 (83%), Gaps = 1/233 (0%)
Query: 1 MASSSDPWVREYSEASRLADDVTSMIADRGSLPQSGPEIMRHTSAIRRKITILGTRLDSL 60
MASSSDPW+REY+EA +L++D+ M+++R + +GP+ R SAIRRKITILGTRLDSL
Sbjct: 1 MASSSDPWMREYNEALKLSEDINGMMSERNASGLTGPDAQRRASAIRRKITILGTRLDSL 60
Query: 61 EALLSRIPPKS-ITDKELHKRQDMLSNLKSRAKQMATSFNMSNFANREDLLGQSKKAADD 119
++LL ++P K +++KE+++R+DM+ NL+S+ Q+A++ NMSNFANR+ L G K D
Sbjct: 61 QSLLVKVPGKQHVSEKEMNRRKDMVGNLRSKTNQVASALNMSNFANRDSLFGTDLKPDDA 120
Query: 120 MSRVAGLDNQGIVSLQRQVMKEQDEGLEKLEETVLSTKHIALAVNEELTLHTRLIDDLDD 179
++RV+G+DNQGIV QRQVM+EQDEGLEKLEETV+STKHIALAVNEELTL TRLIDDLD
Sbjct: 121 INRVSGMDNQGIVVFQRQVMREQDEGLEKLEETVMSTKHIALAVNEELTLQTRLIDDLDY 180
Query: 180 YVDVTNSRLQRVQKRLAILNKRVKGGCSCMALLISVVAIVFLAVIAWLLIKHL 232
VD+T+SRL+RVQK LA++NK +K GCSCM++L+SV+ IV LA++ WLL+K+L
Sbjct: 181 DVDITDSRLRRVQKSLALMNKSMKSGCSCMSMLLSVLGIVGLALVIWLLVKYL 233
>AT1G16240.1 | chr1:5555183-5556340 REVERSE LENGTH=233
Length = 232
Score = 301 bits (772), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 142/232 (61%), Positives = 189/232 (81%)
Query: 1 MASSSDPWVREYSEASRLADDVTSMIADRGSLPQSGPEIMRHTSAIRRKITILGTRLDSL 60
MASSSD W+R Y+EA +L++++ MI++R S +GP+ R SAIRRKITI G +LDSL
Sbjct: 1 MASSSDSWMRAYNEALKLSEEINGMISERSSSAVTGPDAQRRASAIRRKITIFGNKLDSL 60
Query: 61 EALLSRIPPKSITDKELHKRQDMLSNLKSRAKQMATSFNMSNFANREDLLGQSKKAADDM 120
++LL+ I K I++KE+++R+DM+ NL+S+A QMA + NMSNFANR+ LLG K D M
Sbjct: 61 QSLLAEIHGKPISEKEMNRRKDMVGNLRSKANQMANALNMSNFANRDSLLGPDIKPDDSM 120
Query: 121 SRVAGLDNQGIVSLQRQVMKEQDEGLEKLEETVLSTKHIALAVNEELTLHTRLIDDLDDY 180
SRV G+DNQGIV QRQVM+EQDEGLE+LE TV+STKHIALAV+EEL L TRLIDDLD +
Sbjct: 121 SRVTGMDNQGIVGYQRQVMREQDEGLEQLEGTVMSTKHIALAVSEELDLQTRLIDDLDYH 180
Query: 181 VDVTNSRLQRVQKRLAILNKRVKGGCSCMALLISVVAIVFLAVIAWLLIKHL 232
VDVT+SRL+RVQK LA++NK ++ GCSCM++L+SV+ IV LAV+ W+L+K++
Sbjct: 181 VDVTDSRLRRVQKSLAVMNKNMRSGCSCMSMLLSVLGIVGLAVVIWMLVKYM 232
>AT1G16230.1 | chr1:5553467-5554324 REVERSE LENGTH=194
Length = 193
Score = 180 bits (457), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 95/194 (48%), Positives = 134/194 (69%), Gaps = 2/194 (1%)
Query: 1 MASSSDPWVREYSEASRLADDVTSMIADRGSLPQSGPEIMRHTSAIRRKITILGTRLDSL 60
MAS D W+RE +E +L++++ MI +R SL ++ +RH S++RRKITIL TR+ +L
Sbjct: 1 MASLCDSWIREQNETLKLSEEIDGMILERSSLAETSSYALRHASSMRRKITILATRVQTL 60
Query: 61 EALLSRIPPKSITDKELHKRQDMLSNLKSRAKQMATSFNMSNFANREDLLGQSKKAADDM 120
+ LL+ KSI+ KE+ +R+ NL+S+A QMA++ +M F+N + LL K D M
Sbjct: 61 KYLLAESQGKSISGKEMSRRKGTFENLRSKANQMASALDMLKFSNIDILLRPEKD--DIM 118
Query: 121 SRVAGLDNQGIVSLQRQVMKEQDEGLEKLEETVLSTKHIALAVNEELTLHTRLIDDLDDY 180
SRV GLDNQGIV L RQVMKE DE L+ LEETV+ KH AL +NE++ L TRLID LD +
Sbjct: 119 SRVIGLDNQGIVGLHRQVMKEHDEALDMLEETVMRVKHNALVMNEQIGLQTRLIDGLDHH 178
Query: 181 VDVTNSRLQRVQKR 194
VDV++S ++ + R
Sbjct: 179 VDVSDSGVRVIHIR 192
>AT1G16225.1 | chr1:5551041-5552028 REVERSE LENGTH=200
Length = 199
Score = 136 bits (343), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 88/196 (44%), Positives = 122/196 (62%), Gaps = 12/196 (6%)
Query: 25 MIADRGSLPQSGPEIMRHTSAIRRKITILGTRLDSLEALLSRIPPKSITDKELHKRQDML 84
MI +R SL ++ H S +RRKITIL + +L+ LL+ KSI+ KE+ + +DM+
Sbjct: 1 MILERSSLAETSSYARGHASYMRRKITILANGVQTLKNLLAESQGKSISAKEMSRCKDMV 60
Query: 85 SNLKSRAKQMATSFNMSNFANREDLLGQSKKAADDMSRVAGLDNQGIVSLQRQVMKEQDE 144
+L+S+A QMA++ +M F+N LLGQ D MSRV +DNQ IV QR MK QD+
Sbjct: 61 EDLRSKAYQMASALDMLKFSNIGSLLGQD----DIMSRVIDMDNQEIVGFQRTTMKVQDK 116
Query: 145 GLEKLEETVLSTKHIALAVNEELTLHTRLIDDLDDYVDVTNSRLQRVQKRLAILNKRVKG 204
LE LE+ V+ K ALA+N EL L TRLID LD +VDV+ S ++ +Q + +
Sbjct: 117 ALEMLEKGVMHLKREALAMNMELGLQTRLIDRLDHHVDVSASDVEELQ-------RSIDT 169
Query: 205 GCSCMALLISVVAIVF 220
G CM LL+SVV +VF
Sbjct: 170 GV-CMTLLLSVVVVVF 184
>AT1G28490.1 | chr1:10016433-10017842 FORWARD LENGTH=246
Length = 245
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 118/247 (47%), Gaps = 29/247 (11%)
Query: 1 MASSSDPWVREYSEASRLADDVTSMIADRGSLPQSGPEIMRHTSAIRRKITILGT---RL 57
M+S+ DP+ Y + D + + + + P++ + + G+ ++
Sbjct: 1 MSSAQDPF---YIVKEEIQDSIDKLQSTFHKWERISPDMGDQAHVAKELVATCGSIEWQV 57
Query: 58 DSLEALLS---RIPP-KSITDKELHKRQDMLSNLKSR---------AKQMATSFNMSNFA 104
D LE ++ + P I + EL KR+ SN +++ A ++++ ++
Sbjct: 58 DELEKAITVAAKDPSWYGIDEAELEKRRRWTSNARTQVRNVKSGVLAGKVSSGAGHASEV 117
Query: 105 NREDLLGQSKKAADDMSRVAGLDNQGIVSLQ--RQVM--KEQDEGLEKLEETVLSTKHIA 160
RE + + A + G D+ G V + RQ++ K+QDE L++L ++V +
Sbjct: 118 RRELMRMPNSGEASRYDQYGGRDDDGFVQSESDRQMLLIKQQDEELDELSKSVQRIGGVG 177
Query: 161 LAVNEELTLHTRLIDDLDDYVDVTNSRLQRVQKRLAILNKR--VKGG----CSCMALLIS 214
L +++EL R+ID+LD +D T +RL+ VQK++ ++ K+ KG C + L I
Sbjct: 178 LTIHDELVAQERIIDELDTEMDSTKNRLEFVQKKVGMVMKKAGAKGQMMMICFLLVLFII 237
Query: 215 VVAIVFL 221
+ +VFL
Sbjct: 238 LFVLVFL 244
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.131 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,366,669
Number of extensions: 159093
Number of successful extensions: 715
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 713
Number of HSP's successfully gapped: 5
Length of query: 232
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 137
Effective length of database: 8,502,049
Effective search space: 1164780713
Effective search space used: 1164780713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)