BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0119300 Os02g0119300|AK065427
         (435 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42320.1  | chr5:16918651-16920845 REVERSE LENGTH=380          462   e-130

>AT5G42320.1 | chr5:16918651-16920845 REVERSE LENGTH=380
          Length = 379

 Score =  462 bits (1188), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 217/373 (58%), Positives = 277/373 (74%), Gaps = 4/373 (1%)

Query: 53  LSDIKALVARHPDKLSMDTITASNKGYSTDLFIVTFNHAKESTSNSSKIHVLLSFGQHGR 112
           +  I +LV RHPDKLS++ I + NKGY+ ++ +VT+    + + + S   +LL+FGQHGR
Sbjct: 1   MEQIHSLVHRHPDKLSIELIKSGNKGYNAEVNVVTYCRGGKESDDRSNFRILLTFGQHGR 60

Query: 113 ELITSEVALNLLYILTEKRKIAGVDLSSFEKILENLVIKVVPMENLNGRKRVEEGELCDR 172
           ELITSE+A  +L IL+E++ +   +    +  L+ LVIK+VP+EN NGRKRVE G+LC+R
Sbjct: 61  ELITSELAFRILSILSEEQFLPNKNGGILKNTLDKLVIKMVPIENPNGRKRVESGDLCER 120

Query: 173 RNGRGVDLNRNWSVDWGKKEKDYDPYEENPGTAPFSEPEAQIMRELSKSFKPHMWVNVHS 232
           RNGRGVDLNRNW VDWGKKEKDYDP EENPGTAPFSEPE QIMR+L+ SF PH+W+NVHS
Sbjct: 121 RNGRGVDLNRNWGVDWGKKEKDYDPSEENPGTAPFSEPETQIMRKLAISFDPHIWINVHS 180

Query: 233 GMEALFMPYDHKNTTPNGASAHLMRTVLENLNHRHFQDSCLVGSGGGAVGYLAHGTTTDY 292
           GMEALFMPYDHKN TP G  +  MRT+LE LN  H  D C++GSGGG+VGYLAHGT TDY
Sbjct: 181 GMEALFMPYDHKNITPEGLPSQKMRTLLEKLNKFHCHDRCMIGSGGGSVGYLAHGTATDY 240

Query: 293 MYDIVKVPMPFTFEIYGDEKASTSDCFKMFNPVDKTTFDRVINKWCMAFLILFEEGLRNL 352
           +YD+VK PM FTFEIYGD + ++ DCFKMFNPVD   F RV+N W  AF  +F+ G  +L
Sbjct: 241 IYDVVKAPMAFTFEIYGDNQTASRDCFKMFNPVDLPNFKRVLNDWSAAFFTIFQLGPLHL 300

Query: 353 REAQLVSQGAVDNWVPMGGDIVEISAARKSSPDKRKLEGLDLGMQELRTYFRLFMLSTVL 412
                 +  A D WV +   +      RK+   K  +E +D+GMQE++TYFRLF+LS+VL
Sbjct: 301 DGN---TSKAADKWVSIDEYLDGYLVERKNRYGK-NMEVIDVGMQEIKTYFRLFLLSSVL 356

Query: 413 LMFMFCSRISKNR 425
           LMFMFCSRI+K++
Sbjct: 357 LMFMFCSRIAKSK 369



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,847,280
Number of extensions: 388308
Number of successful extensions: 962
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 961
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 334
Effective length of database: 8,337,553
Effective search space: 2784742702
Effective search space used: 2784742702
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)