BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0117800 Os02g0117800|AK063557
         (380 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G17290.1  | chr5:5687160-5689821 REVERSE LENGTH=338            359   1e-99

>AT5G17290.1 | chr5:5687160-5689821 REVERSE LENGTH=338
          Length = 337

 Score =  359 bits (921), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 182/365 (49%), Positives = 237/365 (64%), Gaps = 31/365 (8%)

Query: 12  SAEAARRVWGGAVPLQVHLHDADVXXXXXXXXXXXXXXRIGYLPLLVPIIKAHFSSTLPP 71
           + EA + VW GA+PLQ+HLH +DV              RIGYLPLL+P+IK +F  +LPP
Sbjct: 2   AKEAVKYVWEGAIPLQIHLHKSDVASHPAPPPALVLAPRIGYLPLLIPLIKPYFKDSLPP 61

Query: 72  GIDTVWFEYKGLPLKWYIPIGVLYDLLCADPERPWNLTVHFRGYPSEILTLCDGEDSVKW 131
           G D++WF+YKG PLKWYIP GVL+DLLCA+PERPWNLT+HFRGYP  IL  C+GEDSVKW
Sbjct: 62  GEDSIWFDYKGFPLKWYIPTGVLFDLLCAEPERPWNLTIHFRGYPCNILIPCEGEDSVKW 121

Query: 132 SYMNSLKEAAFIITGNSKNVMNMSQADQGALWQSVMKGNLDGYMNISTRLKLGPFEEDCL 191
           +++NSLKEA +II GN KNVMNMSQ+DQ  LW SVM G+LD Y  +S +LK+G  E++  
Sbjct: 122 NFVNSLKEAQYIINGNCKNVMNMSQSDQEDLWTSVMNGDLDAYTRLSPKLKMGTVEDEFS 181

Query: 192 VRTS--SVEGQQGSDEPESPGSGKPCRVPVRLYVRSVQEDLYDLEDALPVGDWESISYIN 249
            +TS  S + QQ   E E  G  K  R+PVRLYVRS+ +D  +LED   +  W+ ISY+N
Sbjct: 182 RKTSLSSPQSQQVVPETEVAGQVKTARIPVRLYVRSLNKDFENLEDVPEIDTWDDISYLN 241

Query: 250 RPFEVRREEGRSYITLEHALKTLLPEFFSSKASRIPDDSETAPQAPDSAPNDDSDVTPRS 309
           RP E  +EEG+ + TL  A+K+LLPEF   +A    ++             DD+      
Sbjct: 242 RPVEFLKEEGKCF-TLRDAIKSLLPEFMGDRAQTSGEERSI----------DDT------ 284

Query: 310 CEKLEXXXXXXPQEANVANKGKIVKLVRVQGIEVDMDIPFLWVANNLKNPECYLHICVYV 369
                       +EA+ + +   +KLVR+QGIE+ ++IPF WV NNL NPE YLHI V V
Sbjct: 285 ------------EEADGSREMGEIKLVRIQGIEMKLEIPFSWVVNNLMNPEFYLHISVLV 332

Query: 370 GTRKR 374
              +R
Sbjct: 333 KAPQR 337



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,631,972
Number of extensions: 364852
Number of successful extensions: 773
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 771
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 280
Effective length of database: 8,364,969
Effective search space: 2342191320
Effective search space used: 2342191320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)