BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0116800 Os02g0116800|AK102604
(510 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G02170.1 | chr2:556595-558610 REVERSE LENGTH=487 321 7e-88
AT1G30320.1 | chr1:10680348-10682852 FORWARD LENGTH=510 201 6e-52
AT1G67590.1 | chr1:25333137-25334472 REVERSE LENGTH=348 151 1e-36
AT1G53860.1 | chr1:20107165-20109458 REVERSE LENGTH=443 92 8e-19
>AT2G02170.1 | chr2:556595-558610 REVERSE LENGTH=487
Length = 486
Score = 321 bits (822), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 222/518 (42%), Positives = 283/518 (54%), Gaps = 40/518 (7%)
Query: 1 MEYERIEKP-FPTQGGGFSPKRLRAMLLXXXXXXXXXXXXXXXXXXXXXXXXXXVPKXXX 59
M+YERI K + GGGFSP +LR+MLL P+
Sbjct: 1 MDYERIGKTQVTSSGGGFSPGKLRSMLLLGVDRKKNEEEESTPTMRSGSNQIDD-PRVYV 59
Query: 60 XXXXXXXXXXXXXMCEEYKDVDVVXXXXXXXXXXXXXXXHRSRDTHSMGSRVRVPEEDSC 119
++ KDVDVV +S V +
Sbjct: 60 ASG-----------LDDCKDVDVVSEITDCSTSGIARSISLGLQEYSDYDNV-----NEI 103
Query: 120 DSESVASNFEFHKERGASARSVTAAIVPPFSKPAPSKWDDAQKWIASPTTNRPGRAGGVP 179
S S +S FEF K + FSKPAPSKWDDAQKWIASPT NRP + G V
Sbjct: 104 KSVSASSVFEFQKTEKEKVNQRMP--IRSFSKPAPSKWDDAQKWIASPTANRP-KTGQV- 159
Query: 180 QRKMEKTSFGGGRLPATKVVLEA----TEEIDTKRVDPSQEKREIGWQKAVNWAPPDPYP 235
Q K GR + K+V A EE DTKR+D SQ K+++G K +W D Y
Sbjct: 160 QVPGSKKGPSFGRQSSMKIVEVAEHRVVEEPDTKRIDVSQVKKDMG-NKFGSW-EVDSYT 217
Query: 236 EVETCAKSALAEEITVADSA--VTFSRHDSSATLQSATTCIPPPPTVRSVSMRDMGTEMT 293
V++ K L E ++ +SA V SRHDSS AT PP T RSVSMRDMGTEMT
Sbjct: 218 TVDSYVKPVLMVENSIVESATEVNLSRHDSSV----ATAFAQPPSTARSVSMRDMGTEMT 273
Query: 294 PIASQEPSRTGTPVRATSPDCSRPTTPRKTIGPNAIGAVIGHGECSNVELSEQELQMKTR 353
PIASQEPSR GTP+RAT+P S ++ + G A + + SN ELSE+ELQMKTR
Sbjct: 274 PIASQEPSRNGTPIRATTPIRSPISSEPSSPGRQASASPM-----SNKELSEKELQMKTR 328
Query: 354 REIMLLGTQLGKTNIAAWASNKEEEKDASLSLKGVPMDQSTQKVTEIRXXXXXXXXXXXY 413
REIM+LGTQLGK NIAAWAS ++E+KDAS SLK Q+++ V+E R +
Sbjct: 329 REIMVLGTQLGKFNIAAWASKEDEDKDASTSLKTKASLQTSKSVSEARATAWEEAEKAKH 388
Query: 414 LARFKREEIKIQAWEDHQRAKIEAEMRKIEVDVERMRARAQDKLMSQLASARHTADEXXX 473
+ARF+REE+KIQAWE+HQ+AK EAEM+K EV VER++ RAQD+LM +LA+ A+E
Sbjct: 389 MARFRREEMKIQAWENHQKAKSEAEMKKTEVKVERIKGRAQDRLMKKLATIERKAEEKRA 448
Query: 474 XXXXXXXXXXXXTAEQADHIRRTGRMPSSI-GCWNWCS 510
T +QA+ IRRTG++PS + C+++CS
Sbjct: 449 AAEAKKDHQAAKTEKQAEQIRRTGKVPSLLFSCFSFCS 486
>AT1G30320.1 | chr1:10680348-10682852 FORWARD LENGTH=510
Length = 509
Score = 201 bits (512), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 156/428 (36%), Positives = 219/428 (51%), Gaps = 57/428 (13%)
Query: 100 RSRDTHSMGSRVRVPEED---SCDSESVASNFEFHKERGASARSVTAAIVPPFSKPAPSK 156
R D + + P+ED DS + +S+FEFH+ RG + + P S+ PSK
Sbjct: 122 RKGDLNMASPHIMRPQEDENLDYDSNASSSSFEFHRARGERSNQNHGSRGYP-SRQMPSK 180
Query: 157 WDDAQKWIASPTTNRPGRAGGVPQRKMEKTSFGGGRLPATKVVLEATEEIDTKRVDPSQE 216
W+DA+KWI S Q + + + G R+P V A E + R+D Q
Sbjct: 181 WNDAEKWIMSR------------QNMVMRKNGQGNRIPVRIVPDNAGYEHNKSRMDLCQS 228
Query: 217 KREIGWQKAVNWAPPDPYPEV-ETCAKSALAEEITVADSAVTFSRHDSSATLQSATTCIP 275
+ G++K N P P+P + + +L ++ T ++ + S HD +
Sbjct: 229 SQVDGFEKFPNVVPSAPHPILTQEYGGDSLIDQSTQSND-LADSSHDHTTG--------- 278
Query: 276 PPPTVRSVSMRDMGTEMTPIASQEPSRTGTPVRAT----SPDCSRPTTPRKTIGPNAIGA 331
P +RSV MRDMGTEMTPI SQEPSR+ TPV AT SP S P+TPR
Sbjct: 279 -GPAIRSVCMRDMGTEMTPIPSQEPSRSVTPVGATTPLRSPTSSLPSTPRG--------- 328
Query: 332 VIGHGECSNV------ELSEQELQMKTRREIMLLGTQLGKTNIAAWASNKEEEKDASLSL 385
G E S++ ELSE+E + KTRREI+ LG QLGK NIAAWAS +EEE +
Sbjct: 329 --GQPEESSMSKNTRRELSEEEEKAKTRREIVALGVQLGKMNIAAWASKEEEENKKNNGD 386
Query: 386 KGVPMDQSTQKVT-EIRXXXXXXXXXXXYLARFKREEIKIQAWEDHQRAKIEAEMRKIEV 444
+ QK+ E R + AR+KREEI+IQAWE ++AK+EAEMR+IE
Sbjct: 387 A-----EEAQKIEFEKRATAWEEAEKSKHNARYKREEIRIQAWESQEKAKLEAEMRRIEA 441
Query: 445 DVERMRARAQDKLMSQLASARHTADEXXXXXXXXXXXXXXXTAEQADHIRRTGRMPSSIG 504
VE+M+A A+ K+M ++A A+ ++E +A +IR TGR+P+S
Sbjct: 442 KVEQMKAEAEAKIMKKIALAKQRSEEKRALAEARKTRDAEKAVAEAQYIRETGRIPASSY 501
Query: 505 --CWNWCS 510
C W S
Sbjct: 502 KICCGWFS 509
>AT1G67590.1 | chr1:25333137-25334472 REVERSE LENGTH=348
Length = 347
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 119/393 (30%), Positives = 172/393 (43%), Gaps = 76/393 (19%)
Query: 124 VASNFEFHKERGASARSVTAAIVPPFSKPAPSKWDDAQKWIASPTTNRPGRAGGVPQRKM 183
+++ FEF K + + + KPAPSKWDDAQKW++
Sbjct: 19 ISNGFEFQKGSNRTPNHHRSTM----GKPAPSKWDDAQKWLSGVGFA------RGGGGGG 68
Query: 184 EKTSFGGGRLPATKVVLEATEEIDTKRVDPSQEKREIGWQKAVNWAPPDPYPEVETCAKS 243
+K+S ++ D R+ S +RE + D Y E +
Sbjct: 69 DKSSHH------SRSNKPRNSNADDLRLIASASQREREGE--------DQYVEYDD---- 110
Query: 244 ALAEEITVADSAVTFSRHDSSATLQSATTCIPPPPTVRSVSMRDMGTEMTPIASQEPSRT 303
EE+ V D ++ + I P +RSV +RDMGTEMTPI SQEPSRT
Sbjct: 111 ---EEMAAGRPEVETKNVDCGESVWRKESSINPTAVIRSVCVRDMGTEMTPIGSQEPSRT 167
Query: 304 GTPVRATSPDCSRPTTP--RKTIGPNAIGAVIGHGECSNVELSEQELQMKTRREIMLLGT 361
TPVRAT+P P T R + A+G V M+T E+ +
Sbjct: 168 ATPVRATTPVGRSPVTSPVRASQRGEAVGVV-----------------METVTEVRRV-- 208
Query: 362 QLGKTNIAAWASNKEEEKDASLSLKGVPMDQSTQKVTEIRXXXXXXXXXXXYLARFKREE 421
E + S + G + E R ++AR+KREE
Sbjct: 209 ----------------ESNNSEKVNGFVESKKAMSAMEARAMAWDEAERAKFMARYKREE 252
Query: 422 IKIQAWEDHQRAKIEAEMRKIEVDVERMRARAQDKLMSQLASARHTADEXXXXXXXXXXX 481
+KIQAWE+H++ K E EM+K+EV ERM+ARA++KL ++LA+ + A+E
Sbjct: 253 VKIQAWENHEKRKAEMEMKKMEVKAERMKARAEEKLANKLAATKRIAEERRANAEAKLNE 312
Query: 482 XXXXTAEQADHIRRTGRMPSSIG--------CW 506
T+E+AD+IRR+G +PSS CW
Sbjct: 313 KAVKTSEKADYIRRSGHLPSSFSFSFKLPSRCW 345
>AT1G53860.1 | chr1:20107165-20109458 REVERSE LENGTH=443
Length = 442
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 107/365 (29%), Positives = 162/365 (44%), Gaps = 65/365 (17%)
Query: 154 PSKWDDAQKWIASPTTNRPGRAGGVPQRKMEKTSFGGGRLPATKVVLEATEEIDTKRVDP 213
PSKW DA+KW+ S + P + ++ F G + V E + RV
Sbjct: 122 PSKWIDAEKWVTSSGHDSPAHS-------LKNNQFDGFKHQVEVVYSEKS------RVT- 167
Query: 214 SQEKREIGWQKAVNWAPPDPYPEVETCAKSALAEEI-TVADSAVTFSRHDSSATLQSATT 272
E + +V+ +P D K LA E+ + S F DS L+
Sbjct: 168 -----EECFHGSVSLSPQD------LILKDKLANEVPQILPSTEGFIFKDSDKFLRYEEA 216
Query: 273 CIPPPPTVRSVSMRDMGTEMTPIASQEPSRTGTPVRATSPDCSRPTTPRKTIGPNAIGAV 332
V RDMGTEMTPI S SR TP +++SP +R TP + GP
Sbjct: 217 ---------QVQHRDMGTEMTPIGSVTTSRCHTPFKSSSP--ARHNTPSQLSGPLT---- 261
Query: 333 IGHGECSNV-ELSEQELQMKTRREIMLLGT---QLGKTNIAAWASNKEEEKDASLSLKGV 388
E NV ++SE E +++ L G+ Q + + W S +EEE++ S SL+
Sbjct: 262 ----ETKNVIDISEFEDKLR------LSGSSTSQYCYSVTSHWNSREEEEEEISKSLRHF 311
Query: 389 PMDQSTQK-VTEIRXXX-XXXXXXXXYLARFKREEIKIQAWEDHQRAKIEAEMRKIEVDV 446
M+ ++ V+E + + R++REE KIQAW + + AK EA+ RK+EV +
Sbjct: 312 DMESELRRSVSESKAPLWDDEDDKIKFCQRYQREEAKIQAWVNLENAKAEAQSRKLEVKI 371
Query: 447 ERMRARAQDKLMSQLASARHTADEXXXXXXXXXXXXXXXTAEQADHI--RR----TGRMP 500
++MR+ ++KLM ++ A++ AE A + RR TGR
Sbjct: 372 QKMRSNLEEKLMKRMDMVHRRAEDWRATARQQHVEQMQKAAETARKLTNRRGYLVTGR-- 429
Query: 501 SSIGC 505
SS GC
Sbjct: 430 SSCGC 434
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.126 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,290,843
Number of extensions: 348041
Number of successful extensions: 1011
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 998
Number of HSP's successfully gapped: 5
Length of query: 510
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 407
Effective length of database: 8,282,721
Effective search space: 3371067447
Effective search space used: 3371067447
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 114 (48.5 bits)