BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0107200 Os02g0107200|J065048C09
         (145 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G38700.1  | chr2:16180918-16183785 REVERSE LENGTH=413          204   1e-53
AT3G54250.1  | chr3:20082468-20084688 REVERSE LENGTH=420          199   5e-52

>AT2G38700.1 | chr2:16180918-16183785 REVERSE LENGTH=413
          Length = 412

 Score =  204 bits (520), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 102/134 (76%), Positives = 115/134 (85%)

Query: 6   EGQWVLMATGRSPTNIAVIKYWGKRDEALILPVNDSISVTLDPDHLSATTTVAVSPSFPS 65
           E +WV+M T ++PTNIAVIKYWGKRDE  ILP+NDSISVTLDPDHL   TTVAVSPSF  
Sbjct: 3   EEKWVVMVTAQTPTNIAVIKYWGKRDEVRILPINDSISVTLDPDHLCTLTTVAVSPSFDR 62

Query: 66  DRMWLNGKEISLSGGRFQSCLREIRKRAQDVEDEKKGIRIKKEDWGKLHVHIASYNNFPT 125
           DRMWLNGKEISLSG R+Q+CLREIR RA DVED++KGI+I K+DW KLH+HIAS+NNFPT
Sbjct: 63  DRMWLNGKEISLSGSRYQNCLREIRSRADDVEDKEKGIKIAKKDWEKLHLHIASHNNFPT 122

Query: 126 AAGLASSVAGLVCF 139
           AAGLASS AG  C 
Sbjct: 123 AAGLASSAAGFACL 136



>AT3G54250.1 | chr3:20082468-20084688 REVERSE LENGTH=420
          Length = 419

 Score =  199 bits (506), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 100/132 (75%), Positives = 113/132 (85%)

Query: 8   QWVLMATGRSPTNIAVIKYWGKRDEALILPVNDSISVTLDPDHLSATTTVAVSPSFPSDR 67
           +WV M T ++PTNIAVIKYWGKRDE  ILPVNDSISVTLDPDHL   TTVAVSP+F  DR
Sbjct: 5   KWVFMVTAQTPTNIAVIKYWGKRDEVRILPVNDSISVTLDPDHLCTVTTVAVSPAFDRDR 64

Query: 68  MWLNGKEISLSGGRFQSCLREIRKRAQDVEDEKKGIRIKKEDWGKLHVHIASYNNFPTAA 127
           MWLNGKEISLSG R+Q+CLREIR RA DVED +KGI+I+K+DW KL++HIAS+NNFPTAA
Sbjct: 65  MWLNGKEISLSGSRYQNCLREIRGRAGDVEDMEKGIKIRKKDWEKLNLHIASHNNFPTAA 124

Query: 128 GLASSVAGLVCF 139
           GLASS AG  C 
Sbjct: 125 GLASSAAGFACL 136



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.133    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,364,859
Number of extensions: 135396
Number of successful extensions: 394
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 2
Length of query: 145
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 56
Effective length of database: 8,666,545
Effective search space: 485326520
Effective search space used: 485326520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 107 (45.8 bits)