BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0106700 Os02g0106700|AK073056
         (415 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24680.1  | chr5:8453666-8455358 FORWARD LENGTH=400            334   4e-92

>AT5G24680.1 | chr5:8453666-8455358 FORWARD LENGTH=400
          Length = 399

 Score =  334 bits (857), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 185/427 (43%), Positives = 256/427 (59%), Gaps = 40/427 (9%)

Query: 1   MISSCPICNVQVLTAELQWHANAHFDDDQLQTDMELAHQIALTQSTPNPLLLDTHQECNN 60
           M + CP+CN+ +  + +Q H N+HF+DD++   +E  H +AL  ++ +    D     + 
Sbjct: 1   MSALCPVCNLTLPLSLIQSHVNSHFEDDEINPQIETDHHLALQLASDDHSSDDPSSSSSA 60

Query: 61  LFAGDPHXXXXXXXXXXXXXXXXXVLDEQVSCLLQAQLRSNVQEI-QGGVMNLLRACLES 119
             + +                        V+ L+Q Q +S    +  GG++ LLR CLES
Sbjct: 61  SSSNN------------------------VASLVQLQTKSQFYSVGHGGLICLLRNCLES 96

Query: 120 EAG-------SSTSMISGHVDHYQSLSSEDKGWGCGWRNIQMLSSHLLKQRPEAREALFG 172
           E          STS++SG VDH+QS S EDKGWGCGW+NIQM  SHLL  R EA+  LFG
Sbjct: 97  ELKLKSKPLECSTSLLSGFVDHFQS-SKEDKGWGCGWKNIQMQCSHLLSHREEAKRVLFG 155

Query: 173 GSGFVPDIPSLQRWLEIAWDKKFDTLGSSHFHNKVYGAKKWIGTTECAALLRSFGLRARV 232
           GS FVPDIPSLQRWLE+AW+K FD  G+ HF N++ G+K+WIGTTECAALLRSFGL+AR+
Sbjct: 156 GSNFVPDIPSLQRWLELAWNKGFDVSGALHFDNRICGSKRWIGTTECAALLRSFGLKARI 215

Query: 233 VDFDSTESSGPH--SKNGKHAPK-RVQGPMDKFLIKNVSPTSTSS-ELCREDAENMRGQQ 288
           VDF   +S   +        APK +  GPMD++++K        + +    ++  +    
Sbjct: 216 VDFAPEKSKSMYLSVPGSAIAPKVKSYGPMDRYMVKKGGSGKGKAVDSHSSNSSRISKGA 275

Query: 289 VLVDWIWNYFAXXXXXXXXXXXXVLVSDKTPLYFQHQGHSRTIVGIQKQNGQHGNQDRFT 348
           VL++W+WNYF+            V +++K PLYFQH+GHSRTIVG+Q++        ++ 
Sbjct: 276 VLMEWVWNYFS---DNRLSVSSGVHITNKGPLYFQHEGHSRTIVGVQRRLQGTTFTPQYN 332

Query: 349 LLILDPGHRTSDLERALRSKTGWQRLVKRGVHTLRKPQYQLCYVDPGIASSEEMEQLKTI 408
           LLILDP   T  +E AL  K GW+  +KRG HTL+ P+YQ+ YVD GIA  EE+E+LKTI
Sbjct: 333 LLILDPADFTRAIEIALIEKRGWEGYLKRGAHTLKCPEYQMLYVDNGIADGEELEKLKTI 392

Query: 409 DSILVRF 415
           DS  V F
Sbjct: 393 DSHFVEF 399



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.133    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,576,550
Number of extensions: 328915
Number of successful extensions: 677
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 671
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 314
Effective length of database: 8,337,553
Effective search space: 2617991642
Effective search space used: 2617991642
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)