BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0104800 Os02g0104800|AK070860
         (279 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G45060.1  | chr2:18584674-18586688 REVERSE LENGTH=273          124   4e-29
AT4G26410.1  | chr4:13346760-13348791 FORWARD LENGTH=264           79   4e-15

>AT2G45060.1 | chr2:18584674-18586688 REVERSE LENGTH=273
          Length = 272

 Score =  124 bits (312), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 68/177 (38%), Positives = 103/177 (58%)

Query: 103 LKKEYTVHEQVVFGKIKEGAIMAIEHPXXXXXXXXXXXXVLFKRPRSYLIQRVRRIFVSK 162
           +  EY V+EQ+VFGKIK+G  +A  HP               K+ R ++     R+FVS+
Sbjct: 96  IASEYNVYEQMVFGKIKDGVNVAASHPLISGTLAFGVGIFALKKTRRFVYYNTVRMFVSE 155

Query: 163 ETLLSGIQAGVNHMRQTVNLVSNESQKLLDRAATAEKRFQKGWNTLREEGRAIQSELNQI 222
           E LLS     V  +RQ+++ +  ES+KL   A  AE+ F +G   LR+ G+ I+  ++  
Sbjct: 156 EALLSRADLKVKELRQSMDRLKAESEKLERVATVAEEEFIRGRMKLRQAGKQIRGAISSA 215

Query: 223 SDIEKQAVGLKSILNQLPRAHASEFQSEISGLASQVKKEKRVLNNTLTKIANYGVPI 279
             IEKQA GLK +L +LP   AS F+++IS  AS+VK+E+  L   + KI+NYG+ +
Sbjct: 216 YKIEKQAAGLKDVLKELPTREASRFRTQISKRASEVKQERNALTKEVNKISNYGISV 272



>AT4G26410.1 | chr4:13346760-13348791 FORWARD LENGTH=264
          Length = 263

 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 84/174 (48%)

Query: 106 EYTVHEQVVFGKIKEGAIMAIEHPXXXXXXXXXXXXVLFKRPRSYLIQRVRRIFVSKETL 165
           +Y  +E   F K+ +  I A EHP            VL + PR +L +     F S+E  
Sbjct: 90  QYKTYENAFFSKVTDELIYAKEHPAAAIGIGVAASLVLMRGPRRFLFRNTLGRFQSEEAQ 149

Query: 166 LSGIQAGVNHMRQTVNLVSNESQKLLDRAATAEKRFQKGWNTLREEGRAIQSELNQISDI 225
               +  V  +  +V+L+  ES+KLL+R A AEK  ++G + L   G  I      +   
Sbjct: 150 FLKAEKHVQELNMSVDLMKKESRKLLERTALAEKDMKRGLSELMNSGNDIHRLAKSVHKA 209

Query: 226 EKQAVGLKSILNQLPRAHASEFQSEISGLASQVKKEKRVLNNTLTKIANYGVPI 279
           E +A  L   L Q+P   A + ++E++ + S +++++  LN  +  +++ GV +
Sbjct: 210 ECEAADLMDGLRQIPGRDAIKLRAEVASMTSLLRQKRIALNKRIMGMSDLGVSV 263



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.131    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,267,960
Number of extensions: 98820
Number of successful extensions: 402
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 402
Number of HSP's successfully gapped: 2
Length of query: 279
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 182
Effective length of database: 8,447,217
Effective search space: 1537393494
Effective search space used: 1537393494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)