BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0104200 Os02g0104200|AK060830
(223 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G25690.1 | chr4:13090421-13090996 REVERSE LENGTH=192 81 6e-16
AT4G25670.1 | chr4:13085431-13085997 REVERSE LENGTH=189 79 2e-15
AT5G52550.1 | chr5:21327914-21328996 REVERSE LENGTH=361 70 7e-13
>AT4G25690.1 | chr4:13090421-13090996 REVERSE LENGTH=192
Length = 191
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 89/197 (45%), Gaps = 36/197 (18%)
Query: 23 DELDRQKQAEKKRRRLEKALANSAAIISXXXXXXXXXXXXXXXXXXXGAAIAEAVALHVL 82
DE DR KQAEKK+RRLEKALA SAAI + GAAIAEAVALHVL
Sbjct: 23 DEFDRIKQAEKKKRRLEKALATSAAIRAELEKKKQKRLEEQQRLDEEGAAIAEAVALHVL 82
Query: 83 IGEDSDEPCHLMLNKHRRCNHWDHSAGFDFAVDAQGADIYPPDGLIQCADHVYAPKGRCI 142
+GEDSD+ + + GF G D++ + Y P+ C
Sbjct: 83 LGEDSDDSSRVKFGEE---------TGF-------GMDLFRDERT------NYVPRQSCA 120
Query: 143 DW---GIGQPLPSWGEVKDLQLQA---PCYQGMFHQS-VACPGFIAAQAVSSLQIGGDSS 195
+ GIG +G + D P + ++ + V IAAQAVSSLQI D+
Sbjct: 121 SYAVQGIGFVSNGYG-LGDSNWSVSYKPFMKDVWDNNMVISADLIAAQAVSSLQISEDA- 178
Query: 196 DITSPSQGATVVNRMLG 212
+ A V M G
Sbjct: 179 -----DRNAYVFETMFG 190
>AT4G25670.1 | chr4:13085431-13085997 REVERSE LENGTH=189
Length = 188
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 80/172 (46%), Gaps = 27/172 (15%)
Query: 23 DELDRQKQAEKKRRRLEKALANSAAIISXXXXXXXXXXXXXXXXXXXGAAIAEAVALHVL 82
DE DR KQAEKK+RRLEKALA SAAI + GAAIAEAVALHVL
Sbjct: 23 DEFDRIKQAEKKKRRLEKALATSAAIRAELEKKKQKRLEEQQRLDEEGAAIAEAVALHVL 82
Query: 83 IGEDSDEPCHLMLNKHRRCNHWDHSAGFDFAVDAQGADIYPPDGLIQCADHVYAPKGRCI 142
+GEDSD+ + + + F +D L + Y P+ C
Sbjct: 83 LGEDSDDSSRVKFGEEK-----------GFTMD-----------LFRDERTNYVPRQSCA 120
Query: 143 DW---GIGQPLPSWGEVKDLQLQAPCYQGMFHQSVACPG-FIAAQAVSSLQI 190
+ GIG +G + D +G + ++ IAAQAVS+LQI
Sbjct: 121 SYAVQGIGFVSNGYG-LGDSNWSPFTRRGAWDNNMGISADLIAAQAVSALQI 171
>AT5G52550.1 | chr5:21327914-21328996 REVERSE LENGTH=361
Length = 360
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 52/90 (57%)
Query: 23 DELDRQKQAEKKRRRLEKALANSAAIISXXXXXXXXXXXXXXXXXXXGAAIAEAVALHVL 82
+EL+R KQAE+K+RR+EK++A SAAI + GAAIAEAVALHVL
Sbjct: 188 EELERIKQAERKKRRIEKSIATSAAIRAELEKKKLRKLEEQRRLDEEGAAIAEAVALHVL 247
Query: 83 IGEDSDEPCHLMLNKHRRCNHWDHSAGFDF 112
+GED D+ LN+ WD++ +
Sbjct: 248 LGEDCDDSYRNTLNQETGFKPWDYTTKINL 277
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.133 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,986,755
Number of extensions: 156747
Number of successful extensions: 304
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 3
Length of query: 223
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 128
Effective length of database: 8,502,049
Effective search space: 1088262272
Effective search space used: 1088262272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)