BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0103300 Os02g0103300|AK069788
(208 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G46970.1 | chr5:19063918-19064412 REVERSE LENGTH=165 65 3e-11
AT5G46940.1 | chr5:19058230-19058760 REVERSE LENGTH=177 61 5e-10
AT5G46960.1 | chr5:19062220-19062744 REVERSE LENGTH=175 56 1e-08
>AT5G46970.1 | chr5:19063918-19064412 REVERSE LENGTH=165
Length = 164
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 63/139 (45%), Gaps = 8/139 (5%)
Query: 50 IEEACRGASETHHAVAYDHCVASLTADPRSSSSEARSLHGLAMLATRMAIDHATSTVCKM 109
I++ C+ A++ + + Y+ CV SL +P+S + ARSL L ML+T+ A+ TS M
Sbjct: 24 IQDFCKKAADKNPKIHYNFCVKSLEENPQSKT--ARSLDRLVMLSTKNAVSKTTS----M 77
Query: 110 XXXXXXXXXXXXXXXXXXXXFEHCLEQYGGXXXXXXXXXXNLKVRIYGTAMEQLSAALGA 169
CLE Y +K R Y TA +SAA+GA
Sbjct: 78 KGIVDKILKENRFEMYSEKPLRDCLELYSDATNSLKEALTIIKSRDYKTANVVISAAMGA 137
Query: 170 AESCEDAWKGDEGNIPIAA 188
SCE +K EG P+ +
Sbjct: 138 PPSCEIGFK--EGKKPLKS 154
>AT5G46940.1 | chr5:19058230-19058760 REVERSE LENGTH=177
Length = 176
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 6/156 (3%)
Query: 50 IEEACRGASETHHAVAYDHCVASLTADPRSSSSEARSLHGLAMLATRMAIDHATSTVCKM 109
I +C+ A+ T Y+ CV SL +P++ + A+ L GL M +T+ A+ AT+ +
Sbjct: 24 IRNSCKKATATSPKFKYNLCVTSLETNPQAKT--AKDLAGLVMASTKNAVTKATT----L 77
Query: 110 XXXXXXXXXXXXXXXXXXXXFEHCLEQYGGXXXXXXXXXXNLKVRIYGTAMEQLSAALGA 169
CL+ Y +K R Y T LSAA+
Sbjct: 78 KGTVDKIIKGKKVNKMTAMPLRDCLQLYTDAIGSLNEALAGVKSRNYPTVKTVLSAAMDT 137
Query: 170 AESCEDAWKGDEGNIPIAAHDREYGRMAHIAIGFTH 205
+CE +K + P+ + +M I + FT+
Sbjct: 138 PSTCETGFKERKAPSPVTKENDNLYQMILIPLAFTN 173
>AT5G46960.1 | chr5:19062220-19062744 REVERSE LENGTH=175
Length = 174
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 63/156 (40%), Gaps = 7/156 (4%)
Query: 50 IEEACRGASETHHAVAYDHCVASLTADPRSSSSEARSLHGLAMLATRMAIDHATSTVCKM 109
I+++C+ A ++YD CV SLT DP+S + A +L L + +T+ A T+
Sbjct: 24 IQDSCKKAFAKDPQLSYDFCVNSLTQDPQSKA--ATTLESLVLASTKTAAAKITN----- 76
Query: 110 XXXXXXXXXXXXXXXXXXXXFEHCLEQYGGXXXXXXXXXXNLKVRIYGTAMEQLSAALGA 169
+ CL Y N+K R Y A LSAAL
Sbjct: 77 LKGIVAQDLKDQRYQDIVEDLKLCLGFYNDANDDLTTALANIKSRDYQGANINLSAALDV 136
Query: 170 AESCEDAWKGDEGNIPIAAHDREYGRMAHIAIGFTH 205
+CED +K + PI + + I + FT+
Sbjct: 137 PGNCEDDFKEAKKTSPITNENSILFKTILIPLAFTN 172
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.128 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,716,607
Number of extensions: 65468
Number of successful extensions: 175
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 3
Length of query: 208
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 114
Effective length of database: 8,529,465
Effective search space: 972359010
Effective search space used: 972359010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)