BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0102300 Os02g0102300|AK067143
(137 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G21045.1 | chr2:9027858-9028805 FORWARD LENGTH=170 125 5e-30
AT5G66170.2 | chr5:26447828-26448586 FORWARD LENGTH=139 115 8e-27
AT5G66040.1 | chr5:26410557-26411139 FORWARD LENGTH=121 110 2e-25
AT2G17850.1 | chr2:7760005-7760787 REVERSE LENGTH=157 104 2e-23
AT4G35770.1 | chr4:16945073-16945983 FORWARD LENGTH=183 102 5e-23
AT4G27700.1 | chr4:13826541-13827673 REVERSE LENGTH=225 48 1e-06
>AT2G21045.1 | chr2:9027858-9028805 FORWARD LENGTH=170
Length = 169
Score = 125 bits (315), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 73/105 (69%)
Query: 32 SAGHRYVDVRTEEEMNKGHLHNSLNVPFMFVTPQGKEKNPLFVEQFSSLVSKEEHVVVGC 91
S GHRY+DVRT EE K H+ +LN+P+MF T +G+ NP F+ Q +S+ K+EH++V C
Sbjct: 54 STGHRYLDVRTNEEFAKSHVEEALNIPYMFKTDEGRVINPDFLSQVASVCKKDEHLIVAC 113
Query: 92 QSGKRSELACVDLLEAGFKNVKNMGGGYAAWLDNGFPINTPPHTM 136
+G R ACVDLL G+ +V NMGGGY+AW+D GF + PP +
Sbjct: 114 NAGGRGSRACVDLLNEGYDHVANMGGGYSAWVDAGFAGDKPPEDL 158
>AT5G66170.2 | chr5:26447828-26448586 FORWARD LENGTH=139
Length = 138
Score = 115 bits (288), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 77/106 (72%), Gaps = 4/106 (3%)
Query: 30 ITSAGHRYVDVRTEEEMNKGHLHNS--LNVPFMFVTPQGKEKNPLFVEQFSSLVSKEEHV 87
+ +GH+Y+DVRT++E +GH + +N+P+M TPQG+ KN F+EQ SSL++ + +
Sbjct: 25 LLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLLNPADDI 84
Query: 88 VVGCQSGKRSELACVDLLEA--GFKNVKNMGGGYAAWLDNGFPINT 131
+VGCQSG RS A +L+ A G+K V+N+GGGY AW+D+ FPINT
Sbjct: 85 LVGCQSGARSLKATTELVAAVSGYKKVRNVGGGYLAWVDHSFPINT 130
>AT5G66040.1 | chr5:26410557-26411139 FORWARD LENGTH=121
Length = 120
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 66/96 (68%)
Query: 33 AGHRYVDVRTEEEMNKGHLHNSLNVPFMFVTPQGKEKNPLFVEQFSSLVSKEEHVVVGCQ 92
AGHRY+DVRT EE ++GH ++NVP+M G KNP F+EQ SS + ++++VGCQ
Sbjct: 22 AGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNPDFLEQVSSHFGQSDNIIVGCQ 81
Query: 93 SGKRSELACVDLLEAGFKNVKNMGGGYAAWLDNGFP 128
SG RS A DLL AGF VK++ GGY+AW NG P
Sbjct: 82 SGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLP 117
>AT2G17850.1 | chr2:7760005-7760787 REVERSE LENGTH=157
Length = 156
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 70/102 (68%), Gaps = 2/102 (1%)
Query: 30 ITSAGHRYVDVRTEEEMNKGHL--HNSLNVPFMFVTPQGKEKNPLFVEQFSSLVSKEEHV 87
+ +G+ ++DVRT EE KGH+ N NVP+ TPQG+E NP F++ SSL ++ +H+
Sbjct: 43 LLDSGYTFLDVRTVEEFKKGHVDSENVFNVPYWLYTPQGQEINPNFLKHVSSLCNQTDHL 102
Query: 88 VVGCQSGKRSELACVDLLEAGFKNVKNMGGGYAAWLDNGFPI 129
++GC+SG RS A L+ +GFK V+NM GGY AW++ FP+
Sbjct: 103 ILGCKSGVRSLHATKFLVSSGFKTVRNMDGGYIAWVNKRFPV 144
>AT4G35770.1 | chr4:16945073-16945983 FORWARD LENGTH=183
Length = 182
Score = 102 bits (255), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 65/100 (65%)
Query: 30 ITSAGHRYVDVRTEEEMNKGHLHNSLNVPFMFVTPQGKEKNPLFVEQFSSLVSKEEHVVV 89
+ AG+RY+DVRT +E + GH ++NVP+M+ G KNP F+ Q SS K + +++
Sbjct: 81 LAQAGYRYLDVRTPDEFSIGHPTRAINVPYMYRVGSGMVKNPSFLRQVSSHFRKHDEIII 140
Query: 90 GCQSGKRSELACVDLLEAGFKNVKNMGGGYAAWLDNGFPI 129
GC+SG+ S +A DLL AGF + ++ GGY AW +N P+
Sbjct: 141 GCESGQMSFMASTDLLTAGFTAITDIAGGYVAWTENELPV 180
>AT4G27700.1 | chr4:13826541-13827673 REVERSE LENGTH=225
Length = 224
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 33/127 (25%)
Query: 38 VDVRTEEEMNKGHLHNSLNVPF-------------------MFVTPQGKEKNPLFVEQFS 78
+DVR E E GH ++NV F G E+NP F++
Sbjct: 94 LDVRPEAEYKAGHPPGAINVEMYRLIREWTAWDIARRLGFAFFGIFSGTEENPEFIQSVE 153
Query: 79 SLVSKEEHVVVGCQSG--------------KRSELACVDLLEAGFKNVKNMGGGYAAWLD 124
+ + KE ++V C S RS +A L+ G+KNV ++ GG W
Sbjct: 154 AKLDKEAKIIVACSSAGTMKPTQNLPEGQQSRSLIAAYLLVLNGYKNVFHLEGGIYTWGK 213
Query: 125 NGFPINT 131
G P+ T
Sbjct: 214 EGLPVET 220
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.132 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,047,279
Number of extensions: 115262
Number of successful extensions: 238
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 6
Length of query: 137
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 49
Effective length of database: 8,693,961
Effective search space: 426004089
Effective search space used: 426004089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 106 (45.4 bits)