BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0978000 Os01g0978000|AK103874
(134 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G58970.1 | chr5:23808642-23811018 REVERSE LENGTH=306 112 7e-26
AT3G54110.1 | chr3:20038890-20040996 FORWARD LENGTH=307 110 2e-25
AT4G03115.1 | chr4:1383366-1385485 REVERSE LENGTH=315 52 9e-08
>AT5G58970.1 | chr5:23808642-23811018 REVERSE LENGTH=306
Length = 305
Score = 112 bits (279), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 55/103 (53%), Positives = 66/103 (64%), Gaps = 2/103 (1%)
Query: 20 EVCTIPLDTAKVRLQLQKKAALAXXXXXXXXXXXXXXIMCIAREEGVAALWNGIIPGLHR 79
E+CTIPLDTAKVRLQLQ+K + IAREEG++ LW G+I GLHR
Sbjct: 27 ELCTIPLDTAKVRLQLQRKIPTGDGENLPKYRGSIGTLATIAREEGISGLWKGVIAGLHR 86
Query: 80 QCVYGGLRIALYEPVKAFFIRDGDTVAGGVSLFAKILAALMTA 122
QC+YGGLRI LYEPVK + G G + L+ KILAAL+T
Sbjct: 87 QCIYGGLRIGLYEPVKTLLV--GSDFIGDIPLYQKILAALLTG 127
>AT3G54110.1 | chr3:20038890-20040996 FORWARD LENGTH=307
Length = 306
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 68/103 (66%), Gaps = 3/103 (2%)
Query: 20 EVCTIPLDTAKVRLQLQKKAALAXXXXXXXXXXXXXXIMCIAREEGVAALWNGIIPGLHR 79
EVCTIPLDTAKVRLQLQK +ALA + IAREEG+ +LW G++PGLHR
Sbjct: 26 EVCTIPLDTAKVRLQLQK-SALAGDVTLPKYRGLLGTVGTIAREEGLRSLWKGVVPGLHR 84
Query: 80 QCVYGGLRIALYEPVKAFFIRDGDTVAGGVSLFAKILAALMTA 122
QC++GGLRI +YEPVK ++ G G V L KILA L T
Sbjct: 85 QCLFGGLRIGMYEPVKNLYV--GKDFVGDVPLSKKILAGLTTG 125
>AT4G03115.1 | chr4:1383366-1385485 REVERSE LENGTH=315
Length = 314
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 22 CTIPLDTAKVRLQLQKKAALAXXXXXXXXXXXXXXIMCIAREEGVAALWNGIIPGLHRQC 81
T PLD KVRLQ+Q + + + EG +L+ G+ P L R
Sbjct: 51 VTHPLDVVKVRLQMQHVGQRGPLIGMTGI------FLQLMKNEGRRSLYLGLTPALTRSV 104
Query: 82 VYGGLRIALYEPVKAFFIRDGDTVAGGVSLFAKI 115
+YGGLR+ LYEP K F D G ++ KI
Sbjct: 105 LYGGLRLGLYEPTKVSF----DWAFGSTNVLVKI 134
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.140 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,946,899
Number of extensions: 58361
Number of successful extensions: 215
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 3
Length of query: 134
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 46
Effective length of database: 8,693,961
Effective search space: 399922206
Effective search space used: 399922206
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 106 (45.4 bits)