BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0974700 Os01g0974700|J065170O14
(79 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G53620.1 | chr3:19881491-19883308 FORWARD LENGTH=217 76 3e-15
AT2G46860.1 | chr2:19253843-19255060 FORWARD LENGTH=217 76 4e-15
AT2G18230.1 | chr2:7932139-7933560 REVERSE LENGTH=219 75 5e-15
AT4G01480.1 | chr4:626539-627758 FORWARD LENGTH=217 75 8e-15
AT1G01050.1 | chr1:31382-32670 REVERSE LENGTH=213 75 8e-15
>AT3G53620.1 | chr3:19881491-19883308 FORWARD LENGTH=217
Length = 216
Score = 76.3 bits (186), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 33/37 (89%), Positives = 37/37 (100%)
Query: 26 QVDRVLYSSVVYPHNYGFIPRTLCDDSDPLDVLVIMQ 62
+VDR+LYSSVVYPHNYGFIPRTLC+DSDP+DVLVIMQ
Sbjct: 77 KVDRILYSSVVYPHNYGFIPRTLCEDSDPIDVLVIMQ 113
>AT2G46860.1 | chr2:19253843-19255060 FORWARD LENGTH=217
Length = 216
Score = 75.9 bits (185), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 32/37 (86%), Positives = 37/37 (100%)
Query: 26 QVDRVLYSSVVYPHNYGFIPRTLCDDSDPLDVLVIMQ 62
+VDR+LYSSVVYPHNYGFIPRTLC+D+DPLDVLV+MQ
Sbjct: 77 KVDRILYSSVVYPHNYGFIPRTLCEDNDPLDVLVLMQ 113
>AT2G18230.1 | chr2:7932139-7933560 REVERSE LENGTH=219
Length = 218
Score = 75.5 bits (184), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 31/37 (83%), Positives = 37/37 (100%)
Query: 26 QVDRVLYSSVVYPHNYGFIPRTLCDDSDPLDVLVIMQ 62
+VDRVLYSS+VYPHNYGFIPRT+C+DSDP+DVLV+MQ
Sbjct: 79 KVDRVLYSSIVYPHNYGFIPRTICEDSDPMDVLVLMQ 115
>AT4G01480.1 | chr4:626539-627758 FORWARD LENGTH=217
Length = 216
Score = 75.1 bits (183), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 31/37 (83%), Positives = 37/37 (100%)
Query: 26 QVDRVLYSSVVYPHNYGFIPRTLCDDSDPLDVLVIMQ 62
+VDR+LYSSVVYPHNYGF+PRTLC+D+DP+DVLVIMQ
Sbjct: 77 KVDRILYSSVVYPHNYGFVPRTLCEDNDPIDVLVIMQ 113
>AT1G01050.1 | chr1:31382-32670 REVERSE LENGTH=213
Length = 212
Score = 74.7 bits (182), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 31/37 (83%), Positives = 37/37 (100%)
Query: 26 QVDRVLYSSVVYPHNYGFIPRTLCDDSDPLDVLVIMQ 62
+VDR+LYSSVVYPHNYGF+PRTLC+D+DP+DVLVIMQ
Sbjct: 73 KVDRILYSSVVYPHNYGFVPRTLCEDNDPIDVLVIMQ 109
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.138 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,292,852
Number of extensions: 36233
Number of successful extensions: 95
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 5
Length of query: 79
Length of database: 11,106,569
Length adjustment: 51
Effective length of query: 28
Effective length of database: 9,708,353
Effective search space: 271833884
Effective search space used: 271833884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)