BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0973300 Os01g0973300|AK102519
(927 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G55480.2 | chr3:20566372-20571171 REVERSE LENGTH=1116 790 0.0
AT4G23460.1 | chr4:12243899-12248898 REVERSE LENGTH=894 123 5e-28
AT4G11380.2 | chr4:6920608-6925444 FORWARD LENGTH=917 122 7e-28
AT5G11490.2 | chr5:3671964-3676263 FORWARD LENGTH=851 94 3e-19
>AT3G55480.2 | chr3:20566372-20571171 REVERSE LENGTH=1116
Length = 1115
Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/963 (45%), Positives = 600/963 (62%), Gaps = 68/963 (7%)
Query: 1 HDL-LPDETTSLEDTVDVLFSDNSPGVVGATAVAFNSVCPNCLPLISKHFQRLCETLPDI 59
HDL L + +++E+ V +L +D+SPGVVGA A AF S+CPN LI K++++LC+ LPD+
Sbjct: 168 HDLRLEEHASAIEELVGILLNDHSPGVVGAAAAAFTSICPNNFKLIGKNYKKLCQILPDV 227
Query: 60 EEWAQILLIDIILRYVIARHGLVKDSSIFA-----SNLTLKSQGSGDSALIGNETCGTTS 114
EEW QILLI +LRYV+ARHGLV++S + + SN + G G + E G +
Sbjct: 228 EEWGQILLIGTLLRYVVARHGLVRESLMLSIHGTNSNGFCEKDGLGRDLTLDKEDGGKSD 287
Query: 115 TITL------FRHYIEEYSECLEGDIINCSSVTSST-----------NNDVALLLKCTSP 157
+ + + YI+ E L +C+ SS N DV +LL+CTSP
Sbjct: 288 SFDVNLVSLVSKCYIQGPDEYLSRS--SCTDTVSSAFDTKETTSIAHNEDVKILLQCTSP 345
Query: 158 LLWSRNSGVILAAASVHWIMAPVDQLNRVVGPILFTLRSSPDATYVMLGNILVFAKTAPQ 217
LLWS NS V+LAAA V WIMAP++ + ++V P+LF LRSS + YV+L NILVFAK P
Sbjct: 346 LLWSNNSAVVLAAAGVQWIMAPLEDVKKIVKPLLFLLRSSSASKYVVLCNILVFAKAVPS 405
Query: 218 LFAPFYEDFFICTSDPYQTKALKLEILTTIATESSIPAIFEEFQDYIKEPDRRFVADTVA 277
LFAP +E+FFIC+SD YQ KA KLE+L+ IAT SSI +I EF+DYIK+PDRRF ADTVA
Sbjct: 406 LFAPHFENFFICSSDAYQVKAYKLEMLSLIATTSSIASILREFEDYIKDPDRRFAADTVA 465
Query: 278 AIALCAQKLPSITTSCLGGLLALVFYESSISDSANFDGEAAVLVQAILSIKAIVRTDPAS 337
AI LCA++L +I T+CL GLLALV ES D + DGEA VLVQA++SI+ ++ DP
Sbjct: 466 AIGLCAKRLMTIPTTCLDGLLALVRQESFAGDFESADGEAGVLVQAVMSIQTMIERDPLR 525
Query: 338 HEKVIVRLVHSLDKIKEPAARSLIIWIFGEYSSIGNIIPKITPAVLKYLAWSFAAEMLET 397
HEKV+++L SLD IK AAR+ IIW+ G Y S+G+IIP++ + KYLAWSF +E ET
Sbjct: 526 HEKVLIQLFRSLDSIKVAAARATIIWMVGVYCSLGHIIPRMLTTITKYLAWSFKSEASET 585
Query: 398 KLQILNAAAKVIIHSPEEHLEEFKKIMAHVIKLATCDLSYDVRDRARFISRLLPYSTTYL 457
KLQILN AKV+I + K+I+ +V +L DLSYD+RDR RF+ +LL
Sbjct: 586 KLQILNTIAKVLISAEAGDFHMLKRIVVYVFELGEYDLSYDIRDRTRFLKKLLSCKLASH 645
Query: 458 NGNNSSCQSHNEDMFKELANHIFDGKMPSTFHPTNNYRIYLPGSLSQVILHAAPGYAPLP 517
S S E++ + H+F K+ S T + R YLPGSLSQ++LHAAPGY PLP
Sbjct: 646 EPAEDSVASQ-ENIAAHVVEHVFGRKLKSVSPITLHNRFYLPGSLSQIVLHAAPGYEPLP 704
Query: 518 KPQS--------MELIHKTMEPTRGVGNSSESINSDAESGSSTYDGGSVYDSESEVDGSS 569
KP S + + K E + S ES + E+GSS YD S S+ +G
Sbjct: 705 KPCSFVYEEQDQLSDLDKQREAAADLDGSEESSETGDENGSSDYDSESSNGSDFSSEGDE 764
Query: 570 DRNAADSNTKDNQEDPLVHVYDASVDQGQTARDVEDNFASLITTDLTELMSKSALETWLD 629
+ D+N + PL+ + + SV + D EL S+ AL+ WLD
Sbjct: 765 RTVSNDAN---DPAAPLIQISETSV-----------------SADQEELRSRRALDLWLD 804
Query: 630 EAPAEPVQV-----STQASSARVSFTNRSFERKPKLHMLLDPSNSNGLSVLYAFSSEVSP 684
+ P+ Q S Q+S A++S + KPK + L+DP N +GL V YAF SEVS
Sbjct: 805 DQPSTSNQTPSALNSNQSSYAKISIGDVGSRVKPKSYSLVDPGNGSGLKVDYAFLSEVSN 864
Query: 685 VSRLLVCVDLLFENVSTNQLADITIKSEEASGSEDGLDQTLQGSA-----SVPTIVLDKE 739
VS L VCV++LFEN S + ++ ++ EE+ D +QTL G A ++PT++ +E
Sbjct: 865 VSPLHVCVEVLFENSSAEPILEVNLEDEESMKVADSSEQTLVGKANASYNNIPTLIPMEE 924
Query: 740 IQLLAPEQTEKMVLQVHFHHHLLPLKLSVLCNGKRHPAKLHPDIAYFVRPLPMDLNAFLC 799
I L P Q+ K ++QV FHHHLLP++L++ N K+ P KL PD+ Y V+P M + FL
Sbjct: 925 ISCLEPHQSTKRLIQVRFHHHLLPMRLTLHYNEKKVPVKLRPDLGYLVKPFSMSIEEFLA 984
Query: 800 KENQLRGMFEYARRCTFKDHLQKLEHNDDSEEHTDKNLLIAQSLASKILSNANFHLVSMD 859
E++L GMFEY+RRCTF DH++ + +E DK L I +S+ K+LSN+N HLVS+D
Sbjct: 985 TESRLPGMFEYSRRCTFDDHVK----DSRTENGKDKFLSICESITLKVLSNSNLHLVSVD 1040
Query: 860 MPVTFSIEDASGLCWRFSSEILSTSNPCLITILAEGHISEPLDLTAKVNSEDTAFGLNLL 919
+PV S+EDA+GL RFSS+ILS+ P LITI EG +E L+LT K+N E+T FGLNLL
Sbjct: 1041 LPVANSLEDATGLRLRFSSKILSSEIPLLITITVEGKCTEVLNLTVKINCEETVFGLNLL 1100
Query: 920 NRV 922
NR+
Sbjct: 1101 NRI 1103
>AT4G23460.1 | chr4:12243899-12248898 REVERSE LENGTH=894
Length = 893
Score = 123 bits (308), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 106/350 (30%), Positives = 167/350 (47%), Gaps = 37/350 (10%)
Query: 117 TLFRHYIEEYSECLE-GDII---NCSSVTSSTNNDVALLLKCTSPLLWSRNSGVILAAAS 172
T+ + +EC E G + S +S + +++ +P L N V+L+A
Sbjct: 203 TILTKLLTALNECTEWGQVFILDALSRYKASDPREAENIVERVTPRLQHANCAVVLSA-- 260
Query: 173 VHWIMAPVD---------QLNRVVGPILFTLRSS-PDATYVMLGNILVFAKTAPQLFAPF 222
V I+ ++ L + + P L TL S+ P+ YV L NI + + P + A
Sbjct: 261 VKMILQQMELITSTDVIRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQKRPTILAHE 320
Query: 223 YEDFFICTSDPYQTKALKLEILTTIATESSIPAIFEEFQDYIKEPDRRFVADTVAAIALC 282
+ FF +DP K KLEI+ +A++ +I + EF++Y E D FV V AI C
Sbjct: 321 IKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRC 380
Query: 283 AQKLPSITTSCLGGLLALVFYESSISDSANFDGEAAVLVQAILSIKAIVRTDPASHEKVI 342
A KL C+ LL L I N+ V+ +AI+ IK I R P ++E +I
Sbjct: 381 AIKLERAAERCISVLLEL------IKIKVNY-----VVQEAIIVIKDIFRRYPNTYESII 429
Query: 343 VRLVHSLDKIKEPAARSLIIWIFGEYSS-IGNIIPKITPAVLKYLAWSFAAEMLETKLQI 401
L SLD + EP A++ +IWI GEY+ I N +L+ +F E + +LQ+
Sbjct: 430 ATLCESLDTLDEPEAKASMIWIIGEYAERIDN-----ADELLESFLENFPEEPAQVQLQL 484
Query: 402 LNAAAKVIIHSPEEHLEEFKKIMAHVIKLATCDL-SYDVRDRARFISRLL 450
L A K+ + P E ++ ++ V+ AT + + D+RDRA RLL
Sbjct: 485 LTATVKLFLKKPTEGPQQMIQV---VLNNATVETDNPDLRDRAYIYWRLL 531
>AT4G11380.2 | chr4:6920608-6925444 FORWARD LENGTH=917
Length = 916
Score = 122 bits (307), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 154/312 (49%), Gaps = 33/312 (10%)
Query: 151 LLKCTSPLLWSRNSGVILAAASVHWIMAPVD---------QLNRVVGPILFTLRSS-PDA 200
+++ +P L N V+L+A V I+ ++ L + + P L TL S+ P+
Sbjct: 263 IVERVTPRLQHANCAVVLSA--VKMILQQMELITSTDVIRNLCKKMAPPLVTLLSAEPEI 320
Query: 201 TYVMLGNILVFAKTAPQLFAPFYEDFFICTSDPYQTKALKLEILTTIATESSIPAIFEEF 260
YV L NI + + P + A + FF +DP K KLEI+ +A++ +I + EF
Sbjct: 321 QYVALRNINLIVQKRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEF 380
Query: 261 QDYIKEPDRRFVADTVAAIALCAQKLPSITTSCLGGLLALVFYESSISDSANFDGEAAVL 320
++Y E D FV V AI CA KL C+ LL L I N+ V+
Sbjct: 381 KEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLEL------IKIKVNY-----VV 429
Query: 321 VQAILSIKAIVRTDPASHEKVIVRLVHSLDKIKEPAARSLIIWIFGEYSS-IGNIIPKIT 379
+AI+ IK I R P ++E +I L SLD + EP A++ +IWI GEY+ I N
Sbjct: 430 QEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN-----A 484
Query: 380 PAVLKYLAWSFAAEMLETKLQILNAAAKVIIHSPEEHLEEFKKIMAHVIKLATCDL-SYD 438
+L+ +F E + +LQ+L A K+ + P E ++ ++ V+ AT + + D
Sbjct: 485 DELLESFLENFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQV---VLNNATVETDNPD 541
Query: 439 VRDRARFISRLL 450
+RDRA RLL
Sbjct: 542 LRDRAYIYWRLL 553
>AT5G11490.2 | chr5:3671964-3676263 FORWARD LENGTH=851
Length = 850
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 90/355 (25%), Positives = 159/355 (44%), Gaps = 28/355 (7%)
Query: 107 NETCGTTSTITLFRHYIEEYSECLEGDIINCS-SVTSSTNNDVALLLKCTSPLLWSRNSG 165
E+ + I F + I+E++E + I+ + S +ND+ ++ L N
Sbjct: 217 KESLLSKPVIYYFLNRIKEFNEWAQCLILELAVKYVPSDSNDIFDIMNLLEDRLQHANGA 276
Query: 166 VILAAASVHWI----MAPVDQ--LNRVVGPILFTLRS-SPDATYVMLGNILVFAKTAPQL 218
V+LA V M V Q R+ P+L + S SP+ +Y +L ++ + AP +
Sbjct: 277 VVLATVKVFLQLTLSMTDVHQQVYERIKSPLLTLVSSGSPEQSYAILSHLHLLVVRAPFI 336
Query: 219 FAPFYEDFFICTSDPYQTKALKLEILTTIATESSIPAIFEEFQDYIKEPDRRFVADTVAA 278
FA Y+ F+ ++P K LKLE+LT +A ES+ I E +Y D +++ A
Sbjct: 337 FAADYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIAIARESIRA 396
Query: 279 IALCAQKLPSITTSCLGGLLALVFYESSISDSANFDGEAAVLVQAILSIKAIVRTDPA-S 337
+ A + + + + LL + E V + ++ +K ++R P S
Sbjct: 397 VGKIALQQYDV-NAIVDRLLQFLEMEKDY-----------VTAETLVLVKDLLRKYPQWS 444
Query: 338 HEKVIVRLVHSLDKIKEPAARSLIIWIFGEYSSIGNIIPKITPAVLKYLAWSFAAEMLET 397
H+ + V S I+EP A++ +IW+ GEY+ + P + +++ +AE+
Sbjct: 445 HDCISVVGGISSKNIQEPKAKAALIWMLGEYAQDMSDAPYVLENLIENWEEEHSAEV--- 501
Query: 398 KLQILNAAAKVIIHSPEEHLEEFKKIMAHVIKLATCDLSYDVRDRARFISRLLPY 452
+L +L AA K + E +K + + D DV DRA F R+L Y
Sbjct: 502 RLHLLTAAMKCFF----KRAPETQKALGTALAAGIADFHQDVHDRALFYYRVLQY 552
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.132 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 19,759,556
Number of extensions: 845018
Number of successful extensions: 2672
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2659
Number of HSP's successfully gapped: 4
Length of query: 927
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 819
Effective length of database: 8,145,641
Effective search space: 6671279979
Effective search space used: 6671279979
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 116 (49.3 bits)