BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0963300 Os01g0963300|AK067544
         (234 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G28490.1  | chr1:10016433-10017842 FORWARD LENGTH=246          276   8e-75
AT1G79590.1  | chr1:29947064-29948304 FORWARD LENGTH=234           60   8e-10
AT1G16240.1  | chr1:5555183-5556340 REVERSE LENGTH=233             50   9e-07

>AT1G28490.1 | chr1:10016433-10017842 FORWARD LENGTH=246
          Length = 245

 Score =  276 bits (705), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 133/226 (58%), Positives = 169/226 (74%), Gaps = 11/226 (4%)

Query: 1   MSSAQDPFYIVREEIQDSIDKLQTTFHRWEKTPSNTGEHVHLTKELHTSCESIEWQVDEL 60
           MSSAQDPFYIV+EEIQDSIDKLQ+TFH+WE+   + G+  H+ KEL  +C SIEWQVDEL
Sbjct: 1   MSSAQDPFYIVKEEIQDSIDKLQSTFHKWERISPDMGDQAHVAKELVATCGSIEWQVDEL 60

Query: 61  EKTILVASRDPAYYGLDEVELSRRRNWIGSARNQVAAVRRSVEKGKSNSTFSAHQDM--- 117
           EK I VA++DP++YG+DE EL +RR W  +AR QV  V+  V  GK +S      ++   
Sbjct: 61  EKAITVAAKDPSWYGIDEAELEKRRRWTSNARTQVRNVKSGVLAGKVSSGAGHASEVRRE 120

Query: 118 --------GTSRSNHYTAQDNDDFIASESDRQLLLMRQQDEELDELSESVQRIGGVGLTI 169
                     SR + Y  +D+D F+ SESDRQ+LL++QQDEELDELS+SVQRIGGVGLTI
Sbjct: 121 LMRMPNSGEASRYDQYGGRDDDGFVQSESDRQMLLIKQQDEELDELSKSVQRIGGVGLTI 180

Query: 170 HEELSGQERILNDLSLEMETTSNRLDFVQKRVAMVMKKAGIKGQIM 215
           H+EL  QERI+++L  EM++T NRL+FVQK+V MVMKKAG KGQ+M
Sbjct: 181 HDELVAQERIIDELDTEMDSTKNRLEFVQKKVGMVMKKAGAKGQMM 226



>AT1G79590.1 | chr1:29947064-29948304 FORWARD LENGTH=234
          Length = 233

 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 77/140 (55%), Gaps = 10/140 (7%)

Query: 71  PAYYGLDEVELSRRRNWIGSAR---NQVAAVRRSVEKGKSNSTFSAHQDMGTSRS-NHYT 126
           P    + E E++RR++ +G+ R   NQVA+          +S F    D+    + N  +
Sbjct: 68  PGKQHVSEKEMNRRKDMVGNLRSKTNQVASALNMSNFANRDSLFGT--DLKPDDAINRVS 125

Query: 127 AQDNDDFIASESDRQLLLMRQQDEELDELSESVQRIGGVGLTIHEELSGQERILNDLSLE 186
             DN   +  +  RQ+  MR+QDE L++L E+V     + L ++EEL+ Q R+++DL  +
Sbjct: 126 GMDNQGIVVFQ--RQV--MREQDEGLEKLEETVMSTKHIALAVNEELTLQTRLIDDLDYD 181

Query: 187 METTSNRLDFVQKRVAMVMK 206
           ++ T +RL  VQK +A++ K
Sbjct: 182 VDITDSRLRRVQKSLALMNK 201



>AT1G16240.1 | chr1:5555183-5556340 REVERSE LENGTH=233
          Length = 232

 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 8/134 (5%)

Query: 76  LDEVELSRRRNWIGSAR---NQVAAVRRSVEKGKSNSTFSAHQDMGTSRSNHYTAQDNDD 132
           + E E++RR++ +G+ R   NQ+A           +S          S S   T  DN  
Sbjct: 72  ISEKEMNRRKDMVGNLRSKANQMANALNMSNFANRDSLLGPDIKPDDSMS-RVTGMDNQG 130

Query: 133 FIASESDRQLLLMRQQDEELDELSESVQRIGGVGLTIHEELSGQERILNDLSLEMETTSN 192
            +  +  RQ+  MR+QDE L++L  +V     + L + EEL  Q R+++DL   ++ T +
Sbjct: 131 IVGYQ--RQV--MREQDEGLEQLEGTVMSTKHIALAVSEELDLQTRLIDDLDYHVDVTDS 186

Query: 193 RLDFVQKRVAMVMK 206
           RL  VQK +A++ K
Sbjct: 187 RLRRVQKSLAVMNK 200



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.127    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,386,698
Number of extensions: 174599
Number of successful extensions: 585
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 587
Number of HSP's successfully gapped: 4
Length of query: 234
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 139
Effective length of database: 8,502,049
Effective search space: 1181784811
Effective search space used: 1181784811
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 110 (47.0 bits)