BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0962300 Os01g0962300|Os01g0962300
(165 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G19910.1 | chr1:6913317-6914322 FORWARD LENGTH=166 206 4e-54
AT4G34720.1 | chr4:16568223-16569165 REVERSE LENGTH=165 204 2e-53
AT4G38920.1 | chr4:18147330-18148853 FORWARD LENGTH=165 204 2e-53
AT2G16510.1 | chr2:7160007-7160811 REVERSE LENGTH=165 204 2e-53
AT1G75630.2 | chr1:28400662-28402032 FORWARD LENGTH=201 176 6e-45
>AT1G19910.1 | chr1:6913317-6914322 FORWARD LENGTH=166
Length = 165
Score = 206 bits (524), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 111/165 (67%), Positives = 116/165 (70%)
Query: 1 MSSTFNGDEFAPFLGFIGAALALVFSCMGAAYGTARSGVGVAHMGVMRPELVMKSIVPVV 60
M+STF+GDE APF GF+GAA ALVFSCMGAAYGTA+SGVGVA MGVMRPELVMKSIVPVV
Sbjct: 1 MASTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
Query: 61 MAGVLGIYGLIIAVIITTGINPTAMPYYHFDGSVHXXXXXXXXXXXXXXXXXXXXXXXXX 120
MAGVLGIYGLIIAVII+TGINP A YY FDG H
Sbjct: 61 MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
Query: 121 XRANAQQPKLFVGMILILIFAEAXXXXXXXXXXXXSSRAGQSRAH 165
RANAQQPKLFVGMILILIFAEA SSRAGQSRA
Sbjct: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165
>AT4G34720.1 | chr4:16568223-16569165 REVERSE LENGTH=165
Length = 164
Score = 204 bits (518), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 110/163 (67%), Positives = 114/163 (69%)
Query: 3 STFNGDEFAPFLGFIGAALALVFSCMGAAYGTARSGVGVAHMGVMRPELVMKSIVPVVMA 62
STF+GDE APF GF+GAA ALVFSCMGAAYGTA+SGVGVA MGVMRPELVMKSIVPVVMA
Sbjct: 2 STFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 61
Query: 63 GVLGIYGLIIAVIITTGINPTAMPYYHFDGSVHXXXXXXXXXXXXXXXXXXXXXXXXXXR 122
GVLGIYGLIIAVII+TGINP A YY FDG H R
Sbjct: 62 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 121
Query: 123 ANAQQPKLFVGMILILIFAEAXXXXXXXXXXXXSSRAGQSRAH 165
ANAQQPKLFVGMILILIFAEA SSRAGQSRA
Sbjct: 122 ANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164
>AT4G38920.1 | chr4:18147330-18148853 FORWARD LENGTH=165
Length = 164
Score = 204 bits (518), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 110/163 (67%), Positives = 114/163 (69%)
Query: 3 STFNGDEFAPFLGFIGAALALVFSCMGAAYGTARSGVGVAHMGVMRPELVMKSIVPVVMA 62
STF+GDE APF GF+GAA ALVFSCMGAAYGTA+SGVGVA MGVMRPELVMKSIVPVVMA
Sbjct: 2 STFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 61
Query: 63 GVLGIYGLIIAVIITTGINPTAMPYYHFDGSVHXXXXXXXXXXXXXXXXXXXXXXXXXXR 122
GVLGIYGLIIAVII+TGINP A YY FDG H R
Sbjct: 62 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 121
Query: 123 ANAQQPKLFVGMILILIFAEAXXXXXXXXXXXXSSRAGQSRAH 165
ANAQQPKLFVGMILILIFAEA SSRAGQSRA
Sbjct: 122 ANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164
>AT2G16510.1 | chr2:7160007-7160811 REVERSE LENGTH=165
Length = 164
Score = 204 bits (518), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 110/163 (67%), Positives = 114/163 (69%)
Query: 3 STFNGDEFAPFLGFIGAALALVFSCMGAAYGTARSGVGVAHMGVMRPELVMKSIVPVVMA 62
STF+GDE APF GF+GAA ALVFSCMGAAYGTA+SGVGVA MGVMRPELVMKSIVPVVMA
Sbjct: 2 STFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 61
Query: 63 GVLGIYGLIIAVIITTGINPTAMPYYHFDGSVHXXXXXXXXXXXXXXXXXXXXXXXXXXR 122
GVLGIYGLIIAVII+TGINP A YY FDG H R
Sbjct: 62 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 121
Query: 123 ANAQQPKLFVGMILILIFAEAXXXXXXXXXXXXSSRAGQSRAH 165
ANAQQPKLFVGMILILIFAEA SSRAGQSRA
Sbjct: 122 ANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164
>AT1G75630.2 | chr1:28400662-28402032 FORWARD LENGTH=201
Length = 200
Score = 176 bits (445), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 107/198 (54%), Positives = 112/198 (56%), Gaps = 34/198 (17%)
Query: 2 SSTFNGDEFAPFLGFIGAALALVFSCMGAAYGTARSGVGVAHMGVMRPELVMKSIVPVVM 61
SS F+GDE APF GF+GAA ALVFSCMGAAYGTA+SGVGVA MGVMRPELVMKSIVPVVM
Sbjct: 3 SSGFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 62
Query: 62 AGVLGIYGLIIAVIITTGINPTAMPYYHFDGSVHXXXXXXXXXXXXXXXXXXXXXXXXXX 121
AGVLGIYGLIIAVII+TGINP A YY FDG H
Sbjct: 63 AGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGV 122
Query: 122 R--------------------ANAQQ--------------PKLFVGMILILIFAEAXXXX 147
R +N Q PKLFVGMILILIFAEA
Sbjct: 123 RVVDCNPDSKIKIYSFTTSFLSNLSQKELFIDLLSANAQQPKLFVGMILILIFAEALALY 182
Query: 148 XXXXXXXXSSRAGQSRAH 165
SSRAGQSRA
Sbjct: 183 GLIVGIILSSRAGQSRAE 200
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.140 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,312,723
Number of extensions: 68776
Number of successful extensions: 227
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 6
Length of query: 165
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 74
Effective length of database: 8,611,713
Effective search space: 637266762
Effective search space used: 637266762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 108 (46.2 bits)