BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0962200 Os01g0962200|AK067659
         (294 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G71190.1  | chr1:26833597-26834982 REVERSE LENGTH=282          351   2e-97
AT5G11870.2  | chr5:3825720-3827363 FORWARD LENGTH=271            200   7e-52

>AT1G71190.1 | chr1:26833597-26834982 REVERSE LENGTH=282
          Length = 281

 Score =  351 bits (901), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 169/278 (60%), Positives = 205/278 (73%), Gaps = 5/278 (1%)

Query: 5   RRKKWVAWVAAVTIFVVLMLVTPAIPQNEEYHDFADQRRLFLGIPNTLNVISNIPXXXXX 64
           +++   AW +A+ IF++LM+VTP IPQ++ YH+FADQR  FLGIPN LNVISN P     
Sbjct: 2   KKRTMSAWGSAILIFIILMIVTPTIPQSQAYHNFADQRS-FLGIPNFLNVISNFPFLIIG 60

Query: 65  XXXXXXCHY-KNYFRLNSQGELWSWTLFFAGVTAVAFGSSYYHLKPNDATLVWDRLPMTI 123
                 C Y ++YF  + +GE   WT F+ GV AVAFGSSYYHL PNDATL+WDRLPMTI
Sbjct: 61  LIGLILCFYPEDYFSFSLRGEKIGWTCFYIGVAAVAFGSSYYHLHPNDATLLWDRLPMTI 120

Query: 124 AFTSVMAIFIIERVDDRAGTKSLAPLVIAGALSIMYWRFFDDLRPYAVIQFXXXXXXXXX 183
           AFTS+MAIF+IER+D+  GT S+APL++AG +SI+YWRFFDDLRPYA++QF         
Sbjct: 121 AFTSIMAIFVIERIDEHKGTYSIAPLLLAGLVSILYWRFFDDLRPYALVQFVPCIVIPLM 180

Query: 184 XXXXXXXYTHSSYWLWAAGFYLLAKVEEAADKPIYKWTHQIVSGHTLKHLAAAMVPVFLA 243
                  YTHS+YWLWAAGFYLLAKVEEAADKPIY WTH I+SGH+LKHL AAMVPVFL 
Sbjct: 181 AILLPPMYTHSTYWLWAAGFYLLAKVEEAADKPIYSWTHHIISGHSLKHLCAAMVPVFLT 240

Query: 244 LMLAKRTVEPERVSLFQRWKVKLVAVRETRFNKDRNTV 281
           LMLAKRTV+ ER+SL++ WK       E RF    + V
Sbjct: 241 LMLAKRTVQTERISLYKTWK---KGSEEERFEHSYSNV 275



>AT5G11870.2 | chr5:3825720-3827363 FORWARD LENGTH=271
          Length = 270

 Score =  200 bits (509), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 94/253 (37%), Positives = 148/253 (58%), Gaps = 2/253 (0%)

Query: 6   RKKWVAWVAAVTIFVVLMLVTPAIPQNE-EYHDFADQRRLFLGIPNTLNVISNIPXXXXX 64
           ++K +  V +   + ++M +TP +P +   +H FAD+R  F+G+PNTLNV++N P     
Sbjct: 13  KRKRILVVGSFLCWSIIMFITPKVPLDSFRHHIFADKRN-FMGVPNTLNVMTNFPFLIVG 71

Query: 65  XXXXXXCHYKNYFRLNSQGELWSWTLFFAGVTAVAFGSSYYHLKPNDATLVWDRLPMTIA 124
                 C   ++F ++  GE+W WTLF+AG+ ++AFGS++YHLKP+D  +VWD LP+ IA
Sbjct: 72  VLGFVLCIGGSFFNISLNGEIWGWTLFYAGIASLAFGSAFYHLKPDDNRIVWDTLPILIA 131

Query: 125 FTSVMAIFIIERVDDRAGTKSLAPLVIAGALSIMYWRFFDDLRPYAVIQFXXXXXXXXXX 184
           ++S+ + F++ER  ++ G   L  L+    LS+ Y R F+DLR     Q           
Sbjct: 132 YSSLFSSFLVERAGEKVGLSCLILLLFISCLSVAYARVFNDLRLCMTFQLIPCLVIPVMA 191

Query: 185 XXXXXXYTHSSYWLWAAGFYLLAKVEEAADKPIYKWTHQIVSGHTLKHLAAAMVPVFLAL 244
                 YTHS +WLWA   Y +AK+E  AD  IY     I+SGH+L+HL +A+  + L +
Sbjct: 192 VLLPPKYTHSRFWLWATAAYTIAKIEGLADNKIYNANRYIISGHSLEHLCSAVATLLLTI 251

Query: 245 MLAKRTVEPERVS 257
           ML  R++   R+ 
Sbjct: 252 MLLYRSIRFNRLG 264



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.137    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,612,278
Number of extensions: 188761
Number of successful extensions: 475
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 471
Number of HSP's successfully gapped: 2
Length of query: 294
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 196
Effective length of database: 8,419,801
Effective search space: 1650280996
Effective search space used: 1650280996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 111 (47.4 bits)